View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_174 (Length: 247)
Name: NF7708A_low_174
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_174 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5034852 - 5035068
Alignment:
| Q |
1 |
gttgtgcagatgcctaatgtgaacagttgcacccgaatccttacttgaataccactatttgttctacaagaaaatatatgacttgcgaatagacctattg |
100 |
Q |
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| T |
5034852 |
gttgtgcggatgcctaatgtgaacagttgcacccgaatccttacttgaataccattatttgttctacaagaaaatatatgacttgcgaatagacctggtg |
5034951 |
T |
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| Q |
101 |
tgtgccctgcaaatcggtttccattgtgcaaattagtttttgtagcaggttttaatcgaaatcttgcattcatcactggtgaggcaagttcagcctttat |
200 |
Q |
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| T |
5034952 |
tgtgccctgcaaatcggtttccattgtgcaaattagtttttgtag----------tcgaaatcttgcattcattactagtgaggcaagttcagcttttat |
5035041 |
T |
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| Q |
201 |
tctcctttccctgcaactggttcttga |
227 |
Q |
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| T |
5035042 |
tctcctttccctgcaactggttcttga |
5035068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 2533112 - 2533246
Alignment:
| Q |
89 |
atagacctattgtgtgccctgcaaatcgg--tttccattgtgcaaattagtttttgtagcaggttttaatcgaaatcttgcattcatcactggtgaggca |
186 |
Q |
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| T |
2533112 |
atagacctgttgtgtgccctgcaaatcagcatctcatttgtgcaaattagtttttgcagcaggttttaatcgaaatcctgcattcatcacttgtgaggca |
2533211 |
T |
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| Q |
187 |
agttcagcctttattctcctttccctgcaactggt |
221 |
Q |
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| T |
2533212 |
tgttcagctcttattctccattccctgcaagtggt |
2533246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2489687 - 2489740
Alignment:
| Q |
25 |
agttgcacccgaatccttacttgaataccactatttgttctacaagaaaatatat |
79 |
Q |
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| T |
2489687 |
agttgcacccaaatccttacttgactacctctgtttgttctacaa-aaaatatat |
2489740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 5095638 - 5095577
Alignment:
| Q |
20 |
tgaacagttgcacccgaatccttacttgaataccactatttgttctacaagaaaatatatga |
81 |
Q |
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|||||||||||||| |||| ||||||| |||| ||||||||||| |||||||||| |||| |
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| T |
5095638 |
tgaacagttgcaccaaaatctgtacttgactacctctatttgttcttcaagaaaatacatga |
5095577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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