View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_176 (Length: 247)
Name: NF7708A_low_176
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_176 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12396 - 12171
Alignment:
| Q |
1 |
ggaaatcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttcttggagatacttgcaatcattcaaacaaagtctt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12396 |
ggaagtcaatgagttgcagtgtaatgcagacaagcattttaaacttggcggaatccctgtaatttcttggagatacttgcaatcattcaaacaaagtctt |
12297 |
T |
|
| Q |
101 |
tgtaaaaagtgacactctttgacccattctgaaagaatggtgagattacttcccgataggtctaaaactttcacattgacaaaccttcgaagaaaatcgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12296 |
tgtaaaaagtgacactctttgacccattctgaaagaatggtgagattacttcccgataggtctaaaactttcacattgacaaaccttcgaagaaaatcg- |
12198 |
T |
|
| Q |
201 |
ttgatggattgcattgcatgagatgaa |
227 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
12197 |
ttgacggattgcattgcatgagatgaa |
12171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2170865 - 2171090
Alignment:
| Q |
1 |
ggaaatcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttcttggagatacttgcaatcattcaaacaaagtctt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170865 |
ggaagtcaatgagttgcagtgtaatgcagacaagcattttaaacttggcggaatccctgtaatttcttggagatacttgcaatcattcaaacaaagtctt |
2170964 |
T |
|
| Q |
101 |
tgtaaaaagtgacactctttgacccattctgaaagaatggtgagattacttcccgataggtctaaaactttcacattgacaaaccttcgaagaaaatcgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170965 |
tgtaaaaagtgacactctttgacccattctgaaagaatggtgagattacttcccgataggtctaaaactttcacattgacaaaccttcgaagaaaatcg- |
2171063 |
T |
|
| Q |
201 |
ttgatggattgcattgcatgagatgaa |
227 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
2171064 |
ttgacggattgcattgcatgagatgaa |
2171090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2187753 - 2187527
Alignment:
| Q |
1 |
ggaaatcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttcttggagatacttgcaatcattcaaacaaagtctt |
100 |
Q |
| |
|
|||| ||| ||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2187753 |
ggaagtcagtgaattgcattgtaatgcagacaaacgttttaaacttggcggaatccctgtaatttcttggagatacttgcaatcattcaaacaaagtctt |
2187654 |
T |
|
| Q |
101 |
tgtaaaaagtgacactctttgacccattctgaaagaatggtgagattacttcccgataggtctaaaactttcacattgacaaaccttcgaagaaaatcgt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
2187653 |
tgtaaaaagtgacactctttgaggcattttgaaagaacggtgagattacttcccgataggtctaaaacttccacattgacaaaccttcgaagaaaatcat |
2187554 |
T |
|
| Q |
201 |
ttgatggattgcattgcatgagatgaa |
227 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
2187553 |
ttgatggattgcattctatgagatgaa |
2187527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28239272 - 28239206
Alignment:
| Q |
1 |
ggaaatcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttct |
67 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||| |||||||| |||| ||||||||| |||||||| |
|
|
| T |
28239272 |
ggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttct |
28239206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 29828910 - 29828842
Alignment:
| Q |
14 |
ttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttcttggagatacttgcaa |
82 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||||||| |||| ||||||| | |||||||||||| |
|
|
| T |
29828910 |
ttgcagtgcaatgcggacaaacgttttaattttggaggaaccccttgaatttctcgaagatacttgcaa |
29828842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39434 - 39368
Alignment:
| Q |
1 |
ggaaatcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttct |
67 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||| |||||||| |||| ||||||||| |||||||| |
|
|
| T |
39434 |
ggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttct |
39368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 55515 - 55600
Alignment:
| Q |
1 |
ggaaatcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttcttggagatacttgcaatcat |
86 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||||||| |||||| | |||| ||||||||| |||||||| | || |||||||||||| |
|
|
| T |
55515 |
ggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttctcgaaggcacttgcaatcat |
55600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 16694036 - 16693992
Alignment:
| Q |
23 |
aatgcagacaagcgttttaaacttggaggaatccctgtaatttct |
67 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
16694036 |
aatgcagacaaacgttttaaatttggaggaatccctctaatttct |
16693992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 5088325 - 5088399
Alignment:
| Q |
16 |
gcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttcttggagatacttgcaatcattcaa |
90 |
Q |
| |
|
|||| |||||||||||| | |||| | |||||||||||||| |||||||||| ||| ||||||| |||||||| |
|
|
| T |
5088325 |
gcagcgtaatgcagacatgttctttagagttggaggaatccctctaatttcttgaagagacttgcattcattcaa |
5088399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University