View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_181 (Length: 246)
Name: NF7708A_low_181
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_181 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 11860131 - 11860330
Alignment:
| Q |
15 |
tttggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaact |
114 |
Q |
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| T |
11860131 |
tttggtgtttcagaaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaact |
11860230 |
T |
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| Q |
115 |
tgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggctccgagctctattgaggatgtgaagt |
214 |
Q |
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| T |
11860231 |
tgtgataagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagt |
11860330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 11827999 - 11828195
Alignment:
| Q |
18 |
ggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgt |
117 |
Q |
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| T |
11827999 |
ggtgtttcagacagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgt |
11828098 |
T |
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| Q |
118 |
gaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggctccgagctctattgaggatgtgaagt |
214 |
Q |
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| T |
11828099 |
gataagatcttcgacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagt |
11828195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 11902410 - 11902227
Alignment:
| Q |
28 |
aaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatct |
127 |
Q |
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| T |
11902410 |
aaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatct |
11902311 |
T |
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| Q |
128 |
tcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggctccgagctctattgaggatgtgaagt |
214 |
Q |
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| T |
11902310 |
tcaacaccttcaag---tccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgaggaggtgaagt |
11902227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 12038903 - 12039095
Alignment:
| Q |
19 |
gtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtg |
118 |
Q |
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| T |
12038903 |
gtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtg |
12039002 |
T |
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| Q |
119 |
aaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggctccgagctctattgaggatgtgaagt |
214 |
Q |
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| T |
12039003 |
ataagatctttaacaccttcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagt |
12039095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 11731791 - 11731945
Alignment:
| Q |
30 |
agcaaagaaactaaggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatc |
126 |
Q |
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| T |
11731791 |
agcaaagaaactgaggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatc |
11731890 |
T |
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| Q |
127 |
ttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaaga |
184 |
Q |
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| T |
11731891 |
ttcaacaccttcaag---tccatgcacgtgttggatctacatgacttggggatcaaga |
11731945 |
T |
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