View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_188 (Length: 244)
Name: NF7708A_low_188
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_188 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 37880634 - 37880406
Alignment:
| Q |
5 |
acaagtaatatagttttgtatcgtgcacgagtttatttttcattattggatcaataaatctaatagtatgttttattgatcaaatagcgaaagttaattt |
104 |
Q |
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| T |
37880634 |
acaagtaagatagttttgtatcgtgcacgagtttatttttcattattggatcaataaatctaatagtatgttttattgatcaaatagcgaaagttaattt |
37880535 |
T |
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| Q |
105 |
atgcatgatgcaagacttacgtcacttgcgtattgtagaattagatgtatgtaaacttttagtttgcattctttattcttggtgttatttaattttgggg |
204 |
Q |
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| T |
37880534 |
atgcatgatgcaagacttacgtcacttgcgcattgtagaattagatgtatgtaaacttttagtttgcattctttattcttggtgttatttaattttgggg |
37880435 |
T |
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| Q |
205 |
tcattaggaataatttgttgtcgtgatgt |
233 |
Q |
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| T |
37880434 |
tcattaggaataatttgttgtcgtgatgt |
37880406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 38318114 - 38318068
Alignment:
| Q |
76 |
tttattgatcaaatagcgaaagttaatttatgcatgatgcaagactt |
122 |
Q |
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| T |
38318114 |
tttattgatcaaatagtgaaagctaatttatatatgatgcaagactt |
38318068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 26219789 - 26219827
Alignment:
| Q |
99 |
taatttatgcatgatgcaagacttacgtcacttgcgtat |
137 |
Q |
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| T |
26219789 |
taatttatgcatgatgcaagacttatctcacttgcgtat |
26219827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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