View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_195 (Length: 243)

Name: NF7708A_low_195
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_195
NF7708A_low_195
[»] chr4 (5 HSPs)
chr4 (10-233)||(24666621-24666844)
chr4 (10-233)||(34941558-34941782)
chr4 (10-233)||(18363426-18363645)
chr4 (10-233)||(36599283-36599502)
chr4 (57-132)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (10-129)||(26240615-26240735)
chr1 (149-233)||(26240779-26240863)
[»] chr2 (2 HSPs)
chr2 (70-240)||(19697406-19697568)
chr2 (179-233)||(13265597-13265651)
[»] chr3 (2 HSPs)
chr3 (57-233)||(53242722-53242900)
chr3 (34-185)||(43479315-43479456)
[»] chr8 (1 HSPs)
chr8 (120-224)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
Q  10 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666621 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 24666720  T
Q  110 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |    
T  24666721 cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca 24666820  T
Q  210 accattgattcaatcaaacggtat 233  Q
    ||||||||||||||||||||||||    
T  24666821 accattgattcaatcaaacggtat 24666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 34941782 - 34941558
Alignment:
Q  10 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 108  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34941782 agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 34941683  T
Q  109 acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta 208  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||  ||||||||||||||| |||||||||| |||||||| |||||||||     
T  34941682 acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc 34941583  T
Q  209 aaccattgattcaatcaaacggtat 233  Q
    |||| ||||||||||||||||||||    
T  34941582 aaccgttgattcaatcaaacggtat 34941558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 18363426 - 18363645
Alignment:
Q  10 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  18363426 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 18363523  T
Q  110 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 209  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  18363524 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 18363621  T
Q  210 accattgattcaatcaaacggtat 233  Q
    ||||||||||||||| || |||||    
T  18363622 accattgattcaatcgaatggtat 18363645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 36599502 - 36599283
Alignment:
Q  10 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  36599502 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 36599405  T
Q  110 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 209  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  36599404 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 36599307  T
Q  210 accattgattcaatcaaacggtat 233  Q
    ||||||||||||||| || |||||    
T  36599306 accattgattcaatcgaatggtat 36599283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
Q  57 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 132  Q
    |||||||||||| ||| ||||||||||||||| ||||||| | | | |||| ||  ||||||||||||||||||||    
T  8752465 tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag 8752390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
Q  10 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 108  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26240615 agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 26240714  T
Q  109 acagatttcagaggagttgaa 129  Q
    ||| ||||||  |||||||||    
T  26240715 acatatttcaagggagttgaa 26240735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 26240779 - 26240863
Alignment:
Q  149 agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 233  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtat 26240863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 19697568 - 19697406
Alignment:
Q  70 aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa 169  Q
    ||||||||||||||||||| |||||||||||||| ||||       | || ||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  19697568 aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa 19697476  T
Q  170 aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatattattc 240  Q
    |||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| |||| ||||||    
T  19697475 aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtattttattc 19697406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
Q  179 atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 233  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  13265651 atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat 13265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 53242900 - 53242722
Alignment:
Q  57 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca 155  Q
    |||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| |   |||||||| |||||||| ||||||||||||| |||    
T  53242900 tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca 53242801  T
Q  156 agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtat 233  Q
    | |||  | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  53242800 aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtat 53242722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
Q  34 tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 132  Q
    |||| ||||||| || | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||           | |||||||| |     
T  43479315 tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa 43479403  T
Q  133 gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct 185  Q
    ||||||||||||||||||| |||| |||  |||| |||||||||| |||||||    
T  43479404 gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct 43479456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
Q  120 aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt 219  Q
    |||||||||| | ||||| ||||||||||||||||||||||  |||| ||||||| || |||||||||||||  |||| |||||||||  |||||||| |    
T  32566462 aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat 32566558  T
Q  220 caatc 224  Q
    |||||    
T  32566559 caatc 32566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University