View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_199 (Length: 242)
Name: NF7708A_low_199
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_199 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 50012075 - 50011903
Alignment:
| Q |
51 |
gaatggaaaagagatgttatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagatt |
150 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50012075 |
gaatggaaaaaagatgctatggtgtgggagacatataataaaatttaattcaacctcaagatctaacttataatcacatgtggtccatcatgggaagatt |
50011976 |
T |
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| Q |
151 |
ttcacctttcccatgtgaaaaggcacctggttttaaaactatgaacatggttgtaactaaaataaataaatct |
223 |
Q |
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| T |
50011975 |
ttcacctttcccatatgaaaaggcacctggttttaaaactatgaatatggttgtaactaaaataaataaatct |
50011903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 21444389 - 21444515
Alignment:
| Q |
51 |
gaatggaaaagagatgttatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagatt |
150 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21444389 |
gaatggaaaagagatgctatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtttatcatgggaagatt |
21444488 |
T |
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| Q |
151 |
ttcacctttcccatgtgaaaaggcacc |
177 |
Q |
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| T |
21444489 |
ttcacctttcccatgtgaaaaggcacc |
21444515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 42067027 - 42067137
Alignment:
| Q |
68 |
tatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
167 |
Q |
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| T |
42067027 |
tatggtgtgggagacatatgataaaatttaatacaacctcaaaatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
42067126 |
T |
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| Q |
168 |
aaaaggcacct |
178 |
Q |
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||| ||||||| |
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| T |
42067127 |
aaatggcacct |
42067137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 21443610 - 21443508
Alignment:
| Q |
68 |
tatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
167 |
Q |
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| T |
21443610 |
tatggtgtgggagacatatgataaaatttaatacaacctcaaaatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
21443511 |
T |
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| Q |
168 |
aaa |
170 |
Q |
| |
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||| |
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| T |
21443510 |
aaa |
21443508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 42066250 - 42066144
Alignment:
| Q |
51 |
gaatggaaaagagatgttatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagatt |
150 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
42066250 |
gaatggaaaagagatgctatggtgtgggagacatataataaaatttaatacaacctcaagatctaatctataatcacatgtggtctatcatgagaagatt |
42066151 |
T |
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| Q |
151 |
ttcacct |
157 |
Q |
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||||||| |
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| T |
42066150 |
ttcacct |
42066144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 50012848 - 50012958
Alignment:
| Q |
68 |
tatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
167 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50012848 |
tatggtgtgggagacatatgataaaatttaattcaacctcaaaatctaacctataatcacatgtggtctatcatgggaagattttcacctttcccatgtg |
50012947 |
T |
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| Q |
168 |
aaaaggcacct |
178 |
Q |
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||| ||||||| |
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| T |
50012948 |
aaatggcacct |
50012958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 9124408 - 9124445
Alignment:
| Q |
141 |
tgggaagattttcacctttcccatgtgaaaaggcacct |
178 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |
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| T |
9124408 |
tgggaaggttttcacctttcccatgtgaaatggcacct |
9124445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 5929227 - 5929190
Alignment:
| Q |
141 |
tgggaagattttcacctttcccatgtgaaaaggcacct |
178 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |
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| T |
5929227 |
tgggaaggttttcacctttcccatgtgaaatggcacct |
5929190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 42843921 - 42843884
Alignment:
| Q |
141 |
tgggaagattttcacctttcccatgtgaaaaggcacct |
178 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |
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| T |
42843921 |
tgggaaggttttcacctttcccatgtgaaatggcacct |
42843884 |
T |
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