View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_20 (Length: 438)
Name: NF7708A_low_20
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 33399989 - 33399827
Alignment:
| Q |
24 |
tgaagagattcatttctat--tcttcaagaatttatgtgaagactacaacgaaaagaagccactcttgttagctccccgcatgagaaatgtcattcgggt |
121 |
Q |
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| T |
33399989 |
tgaaaagattcatttctatgatcttcaagaatttatgtgaagactacaacgaaaagaagccacatttgttagctccccgcatgagaaatgtcattcgggt |
33399890 |
T |
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| Q |
122 |
gactagaggaaataggaatttggacaatttatagcacctcaaaaggaaggaatcagctgtcct |
184 |
Q |
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| T |
33399889 |
gactagaggaaataggaatttggacaagttatagcacctcaaaaggaaggaatcagctgtcct |
33399827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 218 - 377
Target Start/End: Original strand, 32493567 - 32493717
Alignment:
| Q |
218 |
atcaagctgcaaggcattttaggcaaacaagtcaaaaattagcaacaaattataggaagaatgagaaagaatttatggaagatttgcccgaaaattagct |
317 |
Q |
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| T |
32493567 |
atcaagctgcaaggcattttaggcaaacaagtcaaaaattagcaccaaattataggaagaatgagaaagaatttatggaagatttgcccgaaacttaggt |
32493666 |
T |
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| Q |
318 |
agtggaaactaatcccactaaagaccccaaatgcatcatctcaataatggcgctttcggc |
377 |
Q |
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| T |
32493667 |
agtggaaactaatccca---------ccaaatgcaacatctcaataatggcgctttcggc |
32493717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 33399795 - 33399698
Alignment:
| Q |
291 |
tatggaagatttgcccgaaaattagctagtggaaactaatcccactaaagaccccaaatgcatcatctcaataatggcgctttcggcaacaccgtctt |
388 |
Q |
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| T |
33399795 |
tatggaagatttgcccgaaaattagctagtggaaactaatcccactaaagacaccaaatgcatcatctcaataatggcgctttcggcaacaccgtctt |
33399698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 32492827 - 32492895
Alignment:
| Q |
141 |
ttggacaatttatagcacctcaaaaggaaggaatcagctgtcctaagggaagggggagcattgtgtcca |
209 |
Q |
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| T |
32492827 |
ttggacaatttatagcacctcaaaaggaaggaatcagctgtcctaagggaagggggggcattgcgtcca |
32492895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 32492759 - 32492828
Alignment:
| Q |
24 |
tgaagagattcatttctattcttcaagaatt--tatgtgaagactacaacgaaaagaagccactcttgtt |
91 |
Q |
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| T |
32492759 |
tgaagagattcatttctattcttcaagaatttatatgtgaagactgcaacgaaaagaagccactcttgtt |
32492828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 20287513 - 20287476
Alignment:
| Q |
382 |
ccgtcttgtcacctctgtttgactttcatatttattga |
419 |
Q |
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| T |
20287513 |
ccgtcttgtcacctctgtttgactttcatatttattga |
20287476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 20286252 - 20286214
Alignment:
| Q |
384 |
gtcttgtcacctctgtttgactttcatatttattgatgt |
422 |
Q |
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| T |
20286252 |
gtcttgtcacctctgtttgacttccatatttgttgatgt |
20286214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 6182925 - 6182883
Alignment:
| Q |
380 |
caccgtcttgtcacctctgtttgactttcatatttattgatgt |
422 |
Q |
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| T |
6182925 |
caccgtcttgtcacctctgtttgacttgaatattttttgatgt |
6182883 |
T |
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