View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_203 (Length: 242)

Name: NF7708A_low_203
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_203
NF7708A_low_203
[»] chr3 (27 HSPs)
chr3 (12-242)||(41985617-41985850)
chr3 (12-242)||(41980843-41981073)
chr3 (129-231)||(9494822-9494924)
chr3 (115-236)||(9343840-9343961)
chr3 (115-231)||(9448314-9448430)
chr3 (115-223)||(9329844-9329952)
chr3 (115-242)||(9407355-9407482)
chr3 (115-223)||(9336548-9336656)
chr3 (118-236)||(9655360-9655478)
chr3 (118-242)||(9425562-9425686)
chr3 (118-236)||(9646367-9646485)
chr3 (115-237)||(9695616-9695738)
chr3 (115-236)||(9617463-9617584)
chr3 (130-223)||(9340679-9340772)
chr3 (115-242)||(9397774-9397903)
chr3 (115-217)||(9416587-9416689)
chr3 (129-219)||(9352913-9353003)
chr3 (130-223)||(9347995-9348088)
chr3 (130-223)||(9369649-9369742)
chr3 (115-236)||(9432891-9433012)
chr3 (149-242)||(9441815-9441908)
chr3 (123-236)||(9626488-9626601)
chr3 (109-230)||(9756381-9756502)
chr3 (171-223)||(9614009-9614061)
chr3 (115-163)||(9686751-9686799)
chr3 (168-227)||(9377090-9377149)
chr3 (201-230)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (12-175)||(13170581-13170744)
chr8 (12-242)||(44688682-44688912)
[»] chr1 (8 HSPs)
chr1 (12-242)||(18991193-18991420)
chr1 (133-236)||(235208-235311)
chr1 (120-236)||(4428626-4428742)
chr1 (164-236)||(4439855-4439927)
chr1 (138-236)||(8814385-8814483)
chr1 (133-236)||(251412-251515)
chr1 (138-223)||(231589-231674)
chr1 (140-236)||(246862-246958)
[»] chr2 (1 HSPs)
chr2 (118-242)||(20694304-20694428)
[»] chr6 (7 HSPs)
chr6 (115-231)||(7041496-7041612)
chr6 (133-242)||(7046828-7046937)
chr6 (133-242)||(7025739-7025854)
chr6 (133-194)||(7029850-7029911)
chr6 (133-194)||(9170854-9170915)
chr6 (133-242)||(7012803-7012918)
chr6 (135-194)||(9159515-9159574)
[»] chr7 (2 HSPs)
chr7 (128-234)||(3695687-3695792)
chr7 (115-223)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (129-236)||(18571103-18571213)
chr5 (133-242)||(33541641-33541750)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 41985850 - 41985617
Alignment:
Q  12 ggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtt 108  Q
    ||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41985850 ggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatggtt 41985751  T
Q  109 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985750 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41985651  T
Q  209 ttctgcttctgcttcggatttgtctgttgtcaaa 242  Q
    ||||||||||||||||||||||||||||||||||    
T  41985650 ttctgcttctgcttcggatttgtctgttgtcaaa 41985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 41981073 - 41980843
Alignment:
Q  12 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 111  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  112 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 211  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  212 tgcttctgcttcggatttgtctgttgtcaaa 242  Q
    ||||||||||||  |||||||||||||||||    
T  41980873 tgcttctgcttcaaatttgtctgttgtcaaa 41980843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 9494822 - 9494924
Alignment:
Q  129 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 228  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  229 tgt 231  Q
    |||    
T  9494922 tgt 9494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 9343961 - 9343840
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  215 ttctgcttcggatttgtctgtt 236  Q
    ||||||||||||||||| ||||    
T  9343861 ttctgcttcggatttgtgtgtt 9343840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 9448430 - 9448314
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  215 ttctgcttcggatttgt 231  Q
    |||||||||||||||||    
T  9448330 ttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 9329952 - 9329844
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  215 ttctgcttc 223  Q
    |||||||||    
T  9329852 ttctgcttc 9329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 9407482 - 9407355
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  215 ttctgcttcggatttgtctgttgtcaaa 242  Q
    ||| ||||||||||||| ||||| ||||    
T  9407382 ttcagcttcggatttgtgtgttgccaaa 9407355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 9336656 - 9336548
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  215 ttctgcttc 223  Q
    |||||||||    
T  9336556 ttctgcttc 9336548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 9655360 - 9655478
Alignment:
Q  118 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 217  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  218 tgcttcggatttgtctgtt 236  Q
     ||||||||||||| ||||    
T  9655460 agcttcggatttgtgtgtt 9655478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 9425686 - 9425562
Alignment:
Q  118 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 217  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  218 tgcttcggatttgtctgttgtcaaa 242  Q
     ||||||||||||| ||||| ||||    
T  9425586 agcttcggatttgtgtgttgccaaa 9425562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 9646367 - 9646485
Alignment:
Q  118 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 217  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  218 tgcttcggatttgtctgtt 236  Q
     ||||||||||||| ||||    
T  9646467 agcttcggatttgtgtgtt 9646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 9695616 - 9695738
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  215 ttctgcttcggatttgtctgttg 237  Q
     |||||||| || |||| |||||    
T  9695716 atctgcttcagagttgtgtgttg 9695738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 9617463 - 9617584
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  215 ttctgcttcggatttgtctgtt 236  Q
    ||||||||| ||||||| ||||    
T  9617563 ttctgcttcagatttgtgtgtt 9617584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  130 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 223  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 9397903 - 9397774
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 212  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  213 gcttctgcttcggatttgtctgttgtcaaa 242  Q
    ||||| |||| |||||||| ||||| ||||    
T  9397803 gcttcagctttggatttgtgtgttgccaaa 9397774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 9416689 - 9416587
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  215 ttc 217  Q
    |||    
T  9416589 ttc 9416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 9353003 - 9352913
Alignment:
Q  129 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 219  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| |||||||||||||||||||||||    
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctg 9352913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 9348088 - 9347995
Alignment:
Q  130 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 223  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 9369742 - 9369649
Alignment:
Q  130 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 223  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9369649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 9433012 - 9432891
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  215 ttctgcttcggatttgtctgtt 236  Q
    ||| || |||||||||| ||||    
T  9432912 ttcagcctcggatttgtgtgtt 9432891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 9441815 - 9441908
Alignment:
Q  149 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaa 242  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||| || | |||| ||| ||||||||||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaa 9441908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 9626488 - 9626601
Alignment:
Q  123 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 222  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  223 cggatttgtctgtt 236  Q
    ||||||||| ||||    
T  9626588 cggatttgtgtgtt 9626601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  109 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 208  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  209 ttctgcttctgcttcggatttg 230  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 9614009 - 9614061
Alignment:
Q  171 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 223  Q
    |||||||  ||||| |||||||||| ||||||||| |||||||||||||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttc 9614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 163  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 9377149 - 9377090
Alignment:
Q  168 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 227  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| ||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggat 9377090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  201 tgttcgttttctgcttctgcttcggatttg 230  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 13170581 - 13170744
Alignment:
Q  12 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 111  Q
    |||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||||    
T  13170581 ggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggtttaa 13170680  T
Q  112 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 175  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170681 agcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 44688682 - 44688912
Alignment:
Q  12 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 111  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| ||     
T  44688682 ggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtctac 44688781  T
Q  112 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 211  Q
     ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||||    
T  44688782 ggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttc 44688881  T
Q  212 tgcttctgcttcggatttgtctgttgtcaaa 242  Q
    | || ||||||||||||||||| ||| ||||    
T  44688882 tactactgcttcggatttgtctattgccaaa 44688912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 18991420 - 18991193
Alignment:
Q  12 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 111  Q
    |||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |||    
T  18991420 ggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtctaa 18991321  T
Q  112 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 211  Q
    | ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  18991320 aactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttttc 18991224  T
Q  212 tgcttctgcttcggatttgtctgttgtcaaa 242  Q
    |||||||||||| ||||| ||||||||||||    
T  18991223 tgcttctgcttctgatttatctgttgtcaaa 18991193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 235311 - 235208
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 232  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  233 tgtt 236  Q
    ||||    
T  235211 tgtt 235208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 4428742 - 4428626
Alignment:
Q  120 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 219  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  220 cttcggatttgtctgtt 236  Q
    |||| || |||||||||    
T  4428642 cttctgagttgtctgtt 4428626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 4439927 - 4439855
Alignment:
Q  164 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgtt 236  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtt 4439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 8814385 - 8814483
Alignment:
Q  138 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgtt 236  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgtt 8814483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 232  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  233 tgtt 236  Q
    ||||    
T  251512 tgtt 251515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  138 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 223  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 246958 - 246862
Alignment:
Q  140 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgtt 236  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgtt 246862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 20694304 - 20694428
Alignment:
Q  118 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 217  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  218 tgcttcggatttgtctgttgtcaaa 242  Q
    |||||||||||||| ||||| ||||    
T  20694404 tgcttcggatttgtgtgttgccaaa 20694428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 7041612 - 7041496
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  215 ttctgcttcggatttgt 231  Q
    |||||||||||||||||    
T  7041512 ttctgcttcggatttgt 7041496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 7046937 - 7046828
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 232  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  233 tgttgtcaaa 242  Q
    ||||| ||||    
T  7046837 tgttgccaaa 7046828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 7025854 - 7025739
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 226  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  227 tttgtctgttgtcaaa 242  Q
    ||||| ||||| ||||    
T  7025754 tttgtgtgttgccaaa 7025739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 194  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 9170915 - 9170854
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 194  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 7012918 - 7012803
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 226  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  227 tttgtctgttgtcaaa 242  Q
    ||||| ||||| ||||    
T  7012818 tttgtgtgttgccaaa 7012803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 9159515 - 9159574
Alignment:
Q  135 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 194  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 3695792 - 3695687
Alignment:
Q  128 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 227  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  228 ttgtctg 234  Q
    |||||||    
T  3695693 ttgtctg 3695687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  115 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 214  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  215 ttctgcttc 223  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 18571213 - 18571103
Alignment:
Q  129 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 225  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  226 atttgtctgtt 236  Q
    |||||| ||||    
T  18571113 atttgtgtgtt 18571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 33541750 - 33541641
Alignment:
Q  133 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 232  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  233 tgttgtcaaa 242  Q
     |||| ||||    
T  33541650 cgttgccaaa 33541641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University