View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_206 (Length: 241)
Name: NF7708A_low_206
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_206 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 19033893 - 19034106
Alignment:
| Q |
1 |
aagaatcacaaattattatcaggcagatgtttttctcagaaagtaaaattggaagataagaaaacaaagttgtgaggtatgggtttttaatttgttgcta |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19033893 |
aagaatcaccaattattatcaggcagatgtttttctcagaaagtaaaattggaagataagaaaacaaagttgtgaggtatggg-ttttaatttgttgcta |
19033991 |
T |
|
| Q |
101 |
ctgatgnnnnnnngcttgagaagaatagtgcttcacttatatgtttttacacgtgaaaaagaagttttaatatgtcagcaagtaactgcttagtcatgct |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19033992 |
ctgatg-aaaaaagcttgagaagaatagtgcttcacgtatatgttttcacacatgaaaaagaagttttaatatatcagcaagtaactgcttagtcatgct |
19034090 |
T |
|
| Q |
201 |
agaataaaggcataat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19034091 |
agaataaaggcataat |
19034106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 16085336 - 16085499
Alignment:
| Q |
1 |
aagaatcacaaattattatcaggcagatgtttttctcagaaagtaaaattggaagataagaaaacaaagttgtgaggtatgggtttttaatttgttgcta |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085336 |
aagaatcaccaattattatcaggcatatgtttttctcagaaagtaaaattggaagataagaaaacaaagttgtgaggtatgggtttttaatttgttgcta |
16085435 |
T |
|
| Q |
101 |
ctgatgnnnnnnngcttgagaagaatagtgcttcacttatatgtttttacacgtgaaaaagaagt |
165 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085436 |
ttgatg-aaaaaagcttgagaagaatagtgcttcacttatatgtttttacacgtgaaaaagaagt |
16085499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 3628022 - 3628214
Alignment:
| Q |
16 |
ttatcaggcagatgtttttctcagaaagtaaaattggaagataagaaaacaaagttgtgaggtatgggtttttaattt-gttgctactgatgnnnnnnng |
114 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||||| | ||| ||||||| |||| |
|
|
| T |
3628022 |
ttatcaggcagatgtttatctcaggaagtaaaattggaagagaagaaaacaaagttgtgaggtatcggttttaatttttgttgctattgatcaaaaaa-- |
3628119 |
T |
|
| Q |
115 |
cttgagaagaatagtgcttcacttatatgtttttacacgtgaaaaagaagttttaatatgtcagcaagtaactgcttagtcatgctagaataaag |
209 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||||||||||| || ||||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
3628120 |
cttgagaagaatagtgcttaacttatatattttcacacgtgaaaagaaatttttaatatatcagcaagtacctgcctagtcatgctagaataaag |
3628214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 16088270 - 16088349
Alignment:
| Q |
137 |
ttatatgtttttacacgtgaaaaagaagttttaatatgtcagcaagtaactgcttagtcatgctagaataaaggcataat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16088270 |
ttatatgtttttacacgtgaaaaagaagttttaatatatcatcaagtaactgcttagtcatgctagaataaaggcataat |
16088349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 16085496 - 16085532
Alignment:
| Q |
180 |
aagtaactgcttagtcatgctagaataaaggcataat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085496 |
aagtaactgcttagtcatgctagaataaaggcataat |
16085532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 8263363 - 8263164
Alignment:
| Q |
16 |
ttatcaggcagatgtttttctcagaaagtaaaattggaagataagaaaacaaagttgtgaggtatgggtttttaattt--gttgctactgatgnnnnnnn |
113 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||| |||||||| ||||||||||||||||||||| | |||||| | ||| |||||||||||| |
|
|
| T |
8263363 |
ttatcaggcatatgtttagctcaggaagtaaatttggaagagaagaaaacaaagttgtgaggtgttggttttaactttttgttgctactgatcaaaaaa- |
8263265 |
T |
|
| Q |
114 |
gcttgagaagaatagtgcttcacttatatgtttttacacgtgaaaaagaagttttaatatgtcagcaagtaactgcttagtcatgctagaataaaggcat |
213 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8263264 |
-cttgagaagagcagtgcttaacttatatgttttcacacatgaaaa-gaagttttaatatatcagcaagtacctgcttagtcatgctagaataaaggcat |
8263167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 32791742 - 32791619
Alignment:
| Q |
45 |
aaaattggaagataagaaaacaaagttgtgaggtatgggtttttaattt-gttgctactgatgnnnnnnngcttgagaagaatagtgcttcacttatatg |
143 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||| |||||| | ||| ||||||||| || ||||||||||||||||||| |||||| || |
|
|
| T |
32791742 |
aaaattgaaggagaagaaaacaaagttgtgaggtatcggttttaatttttgttgctactaatcaaaaaa--cttgagaagaatagtgcttaacttatttg |
32791645 |
T |
|
| Q |
144 |
tttttacacgtgaaaaagaagttttaa |
170 |
Q |
| |
|
|||| ||||||| |||||||||||||| |
|
|
| T |
32791644 |
ttttcacacgtg-aaaagaagttttaa |
32791619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 21419115 - 21419147
Alignment:
| Q |
184 |
aactgcttagtcatgctagaataaaggcataat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21419115 |
aactgcttagtcatgctagaataaaggcataat |
21419147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University