View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_214 (Length: 238)

Name: NF7708A_low_214
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_214
NF7708A_low_214
[»] chr3 (19 HSPs)
chr3 (4-224)||(33399482-33399702)
chr3 (4-224)||(14399502-14399722)
chr3 (15-221)||(46992143-46992349)
chr3 (15-224)||(7841909-7842118)
chr3 (15-224)||(36816410-36816619)
chr3 (15-224)||(21955132-21955341)
chr3 (15-224)||(29930326-29930535)
chr3 (15-224)||(29979480-29979689)
chr3 (15-224)||(48249761-48249970)
chr3 (17-224)||(13746615-13746822)
chr3 (15-221)||(77917-78123)
chr3 (17-224)||(9428727-9428934)
chr3 (17-215)||(30946545-30946743)
chr3 (17-224)||(6741847-6742054)
chr3 (17-215)||(3949703-3949901)
chr3 (17-215)||(8159886-8160084)
chr3 (17-215)||(16445580-16445778)
chr3 (17-160)||(50954233-50954376)
chr3 (67-179)||(25059880-25059992)
[»] chr1 (23 HSPs)
chr1 (4-226)||(26466162-26466384)
chr1 (4-238)||(32106523-32106754)
chr1 (4-226)||(16246646-16246865)
chr1 (31-213)||(25231276-25231458)
chr1 (15-224)||(21943258-21943467)
chr1 (15-224)||(50116657-50116866)
chr1 (4-224)||(7980106-7980326)
chr1 (15-224)||(37015872-37016081)
chr1 (15-224)||(51663216-51663425)
chr1 (4-224)||(38691833-38692053)
chr1 (4-224)||(46974111-46974331)
chr1 (17-224)||(29355582-29355789)
chr1 (17-224)||(41454797-41455004)
chr1 (106-224)||(5078984-5079102)
chr1 (68-224)||(13174792-13174948)
chr1 (17-224)||(44619997-44620204)
chr1 (17-215)||(20350416-20350614)
chr1 (17-215)||(3947364-3947562)
chr1 (17-215)||(3984073-3984271)
chr1 (17-215)||(13630376-13630574)
chr1 (17-215)||(38775018-38775216)
chr1 (17-215)||(44466542-44466740)
chr1 (122-202)||(39914002-39914082)
[»] chr5 (19 HSPs)
chr5 (13-226)||(20285965-20286178)
chr5 (31-215)||(23028463-23028654)
chr5 (22-166)||(13157986-13158130)
chr5 (15-224)||(18537230-18537439)
chr5 (4-178)||(20286455-20286630)
chr5 (106-224)||(7020774-7020892)
chr5 (15-224)||(25895995-25896204)
chr5 (106-224)||(27866739-27866857)
chr5 (106-224)||(34078829-34078947)
chr5 (68-224)||(4202833-4202989)
chr5 (43-215)||(13567005-13567177)
chr5 (15-202)||(1035466-1035653)
chr5 (17-224)||(11032346-11032553)
chr5 (17-224)||(37819771-37819978)
chr5 (17-224)||(38859084-38859291)
chr5 (130-224)||(1036424-1036518)
chr5 (122-224)||(28885302-28885404)
chr5 (190-226)||(20287401-20287437)
chr5 (131-215)||(25048472-25048556)
[»] chr4 (14 HSPs)
chr4 (34-226)||(6182653-6182845)
chr4 (15-224)||(4976713-4976922)
chr4 (15-224)||(18580222-18580431)
chr4 (15-224)||(4978848-4979057)
chr4 (68-224)||(11502517-11502673)
chr4 (17-224)||(9890982-9891189)
chr4 (114-224)||(19072551-19072661)
chr4 (15-224)||(51643392-51643603)
chr4 (106-224)||(3404839-3404957)
chr4 (106-224)||(41024248-41024366)
chr4 (105-177)||(4769178-4769250)
chr4 (15-90)||(17140547-17140622)
chr4 (17-215)||(49565367-49565565)
chr4 (134-224)||(38463731-38463821)
[»] chr2 (19 HSPs)
chr2 (14-226)||(17997064-17997276)
chr2 (15-224)||(41007874-41008083)
chr2 (38-224)||(436292-436478)
chr2 (15-224)||(12907386-12907595)
chr2 (15-216)||(11692716-11692917)
chr2 (15-224)||(43949176-43949385)
chr2 (17-224)||(7263992-7264199)
chr2 (106-224)||(3802460-3802578)
chr2 (106-224)||(27275254-27275372)
chr2 (15-224)||(24750616-24750825)
chr2 (106-224)||(34920676-34920794)
chr2 (106-177)||(45476407-45476478)
chr2 (17-215)||(212344-212542)
chr2 (17-215)||(10623357-10623555)
chr2 (106-215)||(5348216-5348325)
chr2 (106-215)||(41561061-41561170)
chr2 (17-224)||(39794930-39795137)
chr2 (17-215)||(38946723-38946921)
chr2 (15-88)||(34920802-34920875)
[»] chr7 (15 HSPs)
chr7 (15-224)||(8400544-8400753)
chr7 (4-224)||(43827500-43827720)
chr7 (15-224)||(47061841-47062050)
chr7 (17-224)||(18106348-18106555)
chr7 (4-145)||(21799959-21800100)
chr7 (17-215)||(617652-617850)
chr7 (106-224)||(15060662-15060780)
chr7 (17-215)||(30787499-30787697)
chr7 (17-215)||(43623038-43623236)
chr7 (17-215)||(45764339-45764537)
chr7 (67-202)||(20908433-20908568)
chr7 (17-176)||(42500367-42500526)
chr7 (116-214)||(3761964-3762062)
chr7 (122-226)||(8194172-8194276)
chr7 (131-215)||(16794516-16794600)
[»] chr8 (14 HSPs)
chr8 (15-224)||(7168858-7169067)
chr8 (15-224)||(35965639-35965848)
chr8 (15-224)||(39751922-39752131)
chr8 (15-221)||(45455334-45455540)
chr8 (15-224)||(43689065-43689274)
chr8 (67-214)||(14401676-14401825)
chr8 (68-202)||(22580914-22581048)
chr8 (38-160)||(2145948-2146070)
chr8 (106-224)||(1115821-1115939)
chr8 (17-215)||(7341039-7341237)
chr8 (17-215)||(8422759-8422957)
chr8 (17-215)||(30304513-30304711)
chr8 (17-215)||(32377811-32378009)
chr8 (17-215)||(32431768-32431966)
[»] chr6 (10 HSPs)
chr6 (15-224)||(18606954-18607163)
chr6 (19-224)||(24220128-24220335)
chr6 (68-224)||(31147333-31147489)
chr6 (17-224)||(28250856-28251063)
chr6 (106-224)||(21358241-21358359)
chr6 (106-224)||(23962223-23962341)
chr6 (17-215)||(1611654-1611852)
chr6 (67-182)||(34111598-34111713)
chr6 (15-90)||(35243561-35243636)
chr6 (17-90)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (106-224)||(16251-16369)
[»] scaffold0494 (1 HSPs)
scaffold0494 (17-224)||(1841-2048)
[»] scaffold0101 (1 HSPs)
scaffold0101 (17-215)||(33769-33967)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 33399482 - 33399702
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399482 atgtaggtgtatgttcatggttcgtggatatcttagtaggcaagcaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 33399581  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  33399582 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtacgtgacttgaccaagagtttggtgcttccaaaaaatattttgt 33399681  T
Q  204 taaatttgaagaccaaaagac 224  Q
    |||||||||||||||||||||    
T  33399682 taaatttgaagaccaaaagac 33399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 14399502 - 14399722
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||| ||||||||||||||||| |  ||| | |      
T  14399502 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattctaaatggagttcacaaccatgccatggagccg 14399601  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
      ||||||| ||||||| ||||| |||||||||||| |||||| ||||||| ||||| ||||| ||||||||||   | ||||||||  ||||||||||     
T  14399602 gctttagaaggacacattcttgccggtagattaaagaaggatgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 14399701  T
Q  204 taaatttgaagaccaaaagac 224  Q
    || ||||||||| ||||||||    
T  14399702 tacatttgaagaacaaaagac 14399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 46992349 - 46992143
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  46992349 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 46992250  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||| ||||| || ||||||||    
T  46992249 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaattttttgatacatttgaag 46992150  T
Q  215 accaaaa 221  Q
    | |||||    
T  46992149 aacaaaa 46992143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 7842118 - 7841909
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  7842118 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatgaagccggctttagaagg 7842019  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| |||||  |||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  7842018 acacattcttgcctgtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 7841919  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  7841918 aacaaaagac 7841909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 36816619 - 36816410
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  36816619 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagg 36816520  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  36816519 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 36816420  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  36816419 aacaaaagac 36816410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 21955341 - 21955132
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| | ||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    | ||||| |    
T  21955341 tgttcatgattagtggatatcaaagtaagtaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctctagaagg 21955242  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    ||||||  |||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  21955241 acacattattgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 21955142  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  21955141 aacaaaagac 21955132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 29930326 - 29930535
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||   |    ||||||| |    
T  29930326 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatgatgccggctttagaagg 29930425  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||  ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  | |||||||| || ||||||||    
T  29930426 acacattcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagacatattttgatacatttgaag 29930525  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  29930526 aacaaaagac 29930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 29979480 - 29979689
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||   |    ||||||| |    
T  29979480 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatgatgccggctttagaagg 29979579  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||  ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  | |||||||| || ||||||||    
T  29979580 acacattcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagacatattttgatacatttgaag 29979679  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  29979680 aacaaaagac 29979689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 48249970 - 48249761
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    |||| || |    
T  48249970 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttataagg 48249871  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | |||||||  |||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||     
T  48249870 acacattcttgccggtagattaaaggaggacgacaagaagactgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaa 48249771  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  48249770 aacaaaagac 48249761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 13746822 - 13746615
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  13746822 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 13746723  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||     
T  13746722 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaa 13746623  T
Q  217 caaaagac 224  Q
    | ||||||    
T  13746622 ccaaagac 13746615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 78123 - 77917
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||   |||| | |    ||||||| |    
T  78123 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatttgatggagccggctttagaagg 78024  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    ||||||  |||| |||||||||||||| || | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  78023 acacattattgccggtagattaaaggaagacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 77924  T
Q  215 accaaaa 221  Q
    | |||||    
T  77923 aacaaaa 77917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 9428934 - 9428727
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  9428934 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 9428835  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || |||||||||     
T  9428834 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaagaa 9428735  T
Q  217 caaaagac 224  Q
    | ||||||    
T  9428734 ccaaagac 9428727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 30946743 - 30946545
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30946743 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30946644  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||||| ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  30946643 acattcttgccggtagattaaaggaggatgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 30946545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 6741847 - 6742054
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  6741847 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 6741946  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||     
T  6741947 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaagaa 6742046  T
Q  217 caaaagac 224  Q
    | ||||||    
T  6742047 ccaaagac 6742054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 3949703 - 3949901
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3949703 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3949802  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  3949803 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 3949901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 8160084 - 8159886
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  8160084 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 8159985  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  8159984 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 8159886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 16445580 - 16445778
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  16445580 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 16445679  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||| | ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || |||||||||    
T  16445680 acattctttccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 16445778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 50954233 - 50954376
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  50954233 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 50954332  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgta 160  Q
    |||| ||||| ||||||||||||||||| | ||||||| |||||    
T  50954333 acattcttgccggtagattaaaggaggacgacaagaagattgta 50954376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 25059992 - 25059880
Alignment:
Q  67 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 166  Q
    |||||||||||| |||||||||||  |||||| || |  ||||| | | ||||| |||||||  ||||||| | |||| | |||| || || ||||||||    
T  25059992 tattcttaatggtgttcacaaccataagatgttaccatatttagcagggcacattcttgcggaaagattaatgaaggacgacaaggagattatatgtgac 25059893  T
Q  167 ctgaccaagagtt 179  Q
     ||||||||||||    
T  25059892 ttgaccaagagtt 25059880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 26466384 - 26466162
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| | |      
T  26466384 atgtaggtgtatgttcattgttcgtggatatcttagtaggcaaacaaatgattggagattaaacattcttaatggagttcacaaccatgagatggagccg 26466285  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
      ||||||| |||||||||||||||||||||||||||||||||  |||||| ||||| ||||| ||||||||| |  ||||||||||  |||||||||||    
T  26466284 gctttagaatgacacatgcttgcgggtagattaaaggaggatgataagaagattgtacgtgacttgaccaagactaaggtgcttccaagaaatattttgt 26466185  T
Q  204 taaatttgaagaccaaaagacaa 226  Q
    |||||||||||| ||||| ||||    
T  26466184 taaatttgaagaacaaaaaacaa 26466162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 32106754 - 32106523
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| |||| |||||||||||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||  |||||||||| || |||||| | | |    
T  32106754 atgtgggtgaatgttcatggttcgtggatatcttagaaggtaaacaaatgattggagattgaatattcttaa--gagttcacaatcatgagatggagcca 32106657  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
    ||||||||| |||||||| |||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||  | ||||||  ||||    
T  32106656 agtttagaaggacacatgattgctggtagattaaaggagaatgacaaaaagcttgtatgtgacttgaccaagagtttggtgctttgaaaaaata-gttgt 32106558  T
Q  204 taaatttgaagaccaaaagacaaaattacaagaca 238  Q
    |||||||||||| |||||||||| ||| |||||||    
T  32106557 taaatttgaagagcaaaagacaagattgcaagaca 32106523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 16246865 - 16246646
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| ||||||||||||||||| ||||||||||  |||||||||||||||| | |||||| || ||| |||||| |||||||||||| | |||| | |      
T  16246865 atgtgggtgtatgttcatggttagtgaatatctgtgtaggcaaacaaatgaatggagattgaa-attgttaatgaagttcacaaccatgcgatggagccg 16246767  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
    | ||||||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| |||| || ||||| ||   ||||| |||| | ||||||||||    
T  16246766 actttagaaggacacatgcttaccggtagattaaaagaggatgacaagaagattgtacgtga-cttaccaaaagcaaggtgcatcca-agaatattttgt 16246669  T
Q  204 taaatttgaagaccaaaagacaa 226  Q
    ||||||||||||  |||||||||    
T  16246668 taaatttgaagagaaaaagacaa 16246646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 213
Target Start/End: Original strand, 25231276 - 25231458
Alignment:
Q  31 atatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggt 130  Q
    |||| |||||||| |||||||||| | |||||| |||||| | ||||||||||||||||  |||| | | | |||||| ||| ||||||||||||| |||    
T  25231276 atatattagtagggaaacaaatgactggagattgaatattttcaatggagttcacaaccgtgagacgaagccaagtttggaaggacacatgcttgcaggt 25231375  T
Q  131 agattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaa 213  Q
    |||| || |||||||  ||||||| ||||| ||||| |||||||  |||||||||||  |  |||||||||||||||||||||    
T  25231376 agatcaagggaggataccaagaagattgtacgtgacttgaccaaatgtttggtgcttttaacaaatattttgttaaatttgaa 25231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 21943467 - 21943258
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||| |||||| ||| |||||  |||||||||||||| || | | |||| || ||||| ||||||||||||||||| | |||| | |   |||||||| |    
T  21943467 tgtttatggttagtggatatcaaagtaggcaaacaaaggaatggggattgaacattctcaatggagttcacaaccatgggatggagccgggtttagaagg 21943368  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||| | ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| |||||||||||    
T  21943367 acacattcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgataaatttgaag 21943268  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  21943267 aacaaaagac 21943258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 50116866 - 50116657
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||| ||| || | |||||| || |||||||||||||||||| |||| | |||| | |    ||||||| |    
T  50116866 tgttcatgattagtggatatcaaagtaagcaaataaaggaatggagattgaacattcttaatggagttcactaccatgcgatggagccggctttagaagg 50116767  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||  ||||| |||||||||||| | ||||||||  |||||||||| || ||||||||    
T  50116766 acacattcttgccggtagattaaaggaggacgacaagaagattgttcgtgacttgaccaagagttagatgcttccaagaaatattttgatacatttgaag 50116667  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  50116666 aacaaaagac 50116657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 7980326 - 7980106
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| |  ||| |        
T  7980326 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcaatgcagtcg 7980227  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
      ||||||| ||||||| ||||| ||||||||||||||||||| ||||||| ||||| ||||| ||||||||||   | ||||||||  ||||||||||     
T  7980226 gctttagaaggacacattcttgccggtagattaaaggaggatgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 7980127  T
Q  204 taaatttgaagaccaaaagac 224  Q
    || ||||||||| ||||||||    
T  7980126 tacatttgaagaacaaaagac 7980106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 37015872 - 37016081
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  37015872 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagctggctttagaagg 37015971  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||  ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  37015972 acacattcttgccggtagattaaaggaggacgacaagaagattgtgcgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 37016071  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  37016072 aacaaaagac 37016081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 51663216 - 51663425
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || |||||||||  |||| ||||||||| || | | |||| || ||||||||||||| ||||||||| | |||| | |    ||||||| |    
T  51663216 tgttcatgattagtgaatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagctcacaaccatgcgatgaagccggctttagaatg 51663315  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| | ||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  51663316 acacattcttgctggtagattaaaggaggaggacaagaagattgtacgcgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 51663415  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  51663416 aacaaaagac 51663425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 38692053 - 38691833
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |      
T  38692053 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccg 38691954  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
    | ||||||| ||||| | ||||| |||| |||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  ||||||||||     
T  38691953 actttagaaggacacgttcttgccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 38691854  T
Q  204 taaatttgaagaccaaaagac 224  Q
    || ||||||| | ||||||||    
T  38691853 tacatttgaataacaaaagac 38691833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 46974111 - 46974331
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||| ||||||| | |||| | |      
T  46974111 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagtttacaaccatgcgatggagccg 46974210  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
    | ||||||| ||||||| ||||| |||| |||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  ||||||||||     
T  46974211 actttagaaggacacattcttgccggtacattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 46974310  T
Q  204 taaatttgaagaccaaaagac 224  Q
    || |||| |||| ||||||||    
T  46974311 tacatttaaagaacaaaagac 46974331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 29355789 - 29355582
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  29355789 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 29355690  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||     
T  29355689 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaa 29355590  T
Q  217 caaaagac 224  Q
    | ||||||    
T  29355589 ccaaagac 29355582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 41454797 - 41455004
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  41454797 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 41454896  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||     
T  41454897 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaa 41454996  T
Q  217 caaaagac 224  Q
    | ||||||    
T  41454997 ccaaagac 41455004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 5078984 - 5079102
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||  ||    
T  5078984 tttagaaggacacattcttgccggtagattaaaggaggacggcaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttaata 5079083  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  5079084 catttgaagaaccaaagac 5079102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 13174792 - 13174948
Alignment:
Q  68 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacc 167  Q
    ||||||||||||||||||||||| | |||| | |    ||||| | ||||||| || || ||||||||||||||||| | ||||||| ||||  |||||     
T  13174792 attcttaatggagttcacaaccatgcgatggagccggctttaggaggacacattctcgctggtagattaaaggaggacgacaagaagattgttcgtgact 13174891  T
Q  168 tgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||||||||||   | ||||||||  |||||||||| || ||||||||| ||||||||    
T  13174892 tgaccaagagcaagatgcttccaataaatattttgatacatttgaagaacaaaagac 13174948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 44620204 - 44619997
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  44620204 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 44620105  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || |||||||||     
T  44620104 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaagaa 44620005  T
Q  217 caaaagac 224  Q
    | ||||||    
T  44620004 ccaaagac 44619997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 20350416 - 20350614
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | ||||||| |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  20350416 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattaaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 20350515  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  20350516 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 20350614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 3947562 - 3947364
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3947562 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3947463  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  3947462 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 3947364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 3984073 - 3984271
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3984073 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3984172  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  3984173 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 3984271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 13630376 - 13630574
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  13630376 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 13630475  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||| | ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || |||||||||    
T  13630476 acattctttccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 13630574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 38775216 - 38775018
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38775216 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38775117  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  38775116 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 38775018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 44466542 - 44466740
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  44466542 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 44466641  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  44466642 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 44466740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 39914002 - 39914082
Alignment:
Q  122 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttg 202  Q
    |||||| | ||||||| | |||||| ||||||| ||||| ||||| ||||||||||||||||||  | | |||||||||||    
T  39914002 cttgcgagaagattaatgaaggatgacaagaagattgtacgtgacttgaccaagagtttggtgcaacaaaaaaatattttg 39914082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 20285965 - 20286178
Alignment:
Q  13 tatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaa 112  Q
    ||||||||||||  ||| |||||||||||||||||||||||| | || | | || ||||||||||||||||||||||| | |||| | |    |||||||    
T  20285965 tatgttcatggtaagtggatatcttagtaggcaaacaaatgaatggaaactgaacattcttaatggagttcacaaccatgtgatggagccggctttagaa 20286064  T
Q  113 agacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttga 212  Q
     ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||  ||||||||||  ||||||||||||||||||||    
T  20286065 ggacacatgcttgcgggtagattaaaggaggatgacaagaagattgtatgtgacttaaccaagagtaaggtgcttccaagaaatattttgttaaatttga 20286164  T
Q  213 agaccaaaagacaa 226  Q
    ||| ||||||||||    
T  20286165 agagcaaaagacaa 20286178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 23028654 - 23028463
Alignment:
Q  31 atatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggt 130  Q
    ||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||||| |   ||||||||||  ||||||||||||||||    
T  23028654 atatcttagtagggaaacaaatgattggagattgaatattattaatggagttcacaaccatgagatgaaggcaagtttagaagaacacatgcttgcgggt 23028555  T
Q  131 agattaaaggaggatggcaagaagcttgta-------tgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    ||||||| |||||||| ||||||| |||||        ||||| |||||||||||||| ||||| || |||||||||| |||||||||||||    
T  23028554 agattaagggaggatgacaagaagattgtacatgattggtgacttgaccaagagtttgatgctttcaaaaaatattttattaaatttgaaga 23028463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 13158130 - 13157986
Alignment:
Q  22 ggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatg 121  Q
    |||||||| |||||||| || |||||||||||||| |||||| || ||||||||||||||||||||||| || ||| |   || |||| || ||| ||||    
T  13158130 ggttcgtggatatcttaataagcaaacaaatgattggagattgaacattcttaatggagttcacaaccatgaaatggagtcaaatttaaaaggacgcatg 13158031  T
Q  122 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 166  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||    
T  13158030 cttgcgggtagattaaaggaggatgacaagaaacttgtatgtgac 13157986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 18537439 - 18537230
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| | ||||||| || | | |||| || ||||||||||||||||||||||| | |||  | | |  ||||||| |    
T  18537439 tgttcatgattagtggatatcaaagtaagaaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgattgagccagctttagaagg 18537340  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||||||||||  | ||||||||  |||||||||| || ||||||||    
T  18537339 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagtgagatgcttccaagaaatattttgatacatttgaag 18537240  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  18537239 aacaaaagac 18537230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 20286455 - 20286630
Alignment:
Q  4 atgtaggtgtatgttcatggttc-gtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacg 102  Q
    |||| ||||||||||||||| |  ||| |||||||||||||||||||||||| | ||   | || ||||||||||||||| ||||||| | |||| | |     
T  20286455 atgtgggtgtatgttcatgggtaagtggatatcttagtaggcaaacaaatgaatggaacctgaacattcttaatggagtttacaaccatgtgatggagcc 20286554  T
Q  103 aagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagt 178  Q
       ||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||  |||| |||||||||||    
T  20286555 ggctttagaaggacacatgcttgcgggtagattaaaggaggatgacaaaaagattgtacatgacttgaccaagagt 20286630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 7020892 - 7020774
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||| ||||||||||   | ||||||||  |||||||||| ||    
T  7020892 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtatgtgacttgaccaagaggaagatgcttccaagaaatattttgata 7020793  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  7020792 catttgaagaaccaaagac 7020774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 25896204 - 25895995
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  25896204 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagg 25896105  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||     
T  25896104 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaa 25896005  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  25896004 aacaaaagac 25895995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 27866857 - 27866739
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  27866857 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 27866758  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  27866757 catttgaagaaccaaagac 27866739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 34078829 - 34078947
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  34078829 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 34078928  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  34078929 catttgaagaaccaaagac 34078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 4202989 - 4202833
Alignment:
Q  68 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacc 167  Q
    ||||||||||||||||||||||| | |||| | |    ||||||| ||||||  ||||| ||||||||||||||||| | ||||||| ||||| |||||     
T  4202989 attcttaatggagttcacaaccatgcgatggagccggctttagaaggacacactcttgccggtagattaaaggaggacgacaagaagattgtacgtgact 4202890  T
Q  168 tgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||| ||||||   | ||||||||   ||||||||| || ||||||||| ||||||||    
T  4202889 tgatcaagagcaagatgcttccaagtaatattttgatacatttgaagaacaaaagac 4202833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 13567177 - 13567005
Alignment:
Q  43 gcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggag 142  Q
    ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | | |  ||||||| ||||||| ||||| |||||||||||| ||    
T  13567177 gcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccagctttagaaggacacattcttgccggtagattaaagaag 13567078  T
Q  143 gatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    || | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||    
T  13567077 gacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 13567005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 1035653 - 1035466
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| |  ||| | |    ||||||| |    
T  1035653 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgccatggagccggctttagaagg 1035554  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttg 202  Q
    |||||| ||||| ||||||||||||||||| | ||||||  ||||| ||||| ||||||||||   | ||||||||  ||||||||||    
T  1035553 acacattcttgccggtagattaaaggaggacgacaagaatattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttg 1035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 11032553 - 11032346
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  11032553 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaatgac 11032454  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| || ||   | ||||||||  |||||||||| || |||||||||     
T  11032453 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaaagcaagatgcttccaagaaatattttgatacatttgaagaa 11032354  T
Q  217 caaaagac 224  Q
    | ||||||    
T  11032353 ccaaagac 11032346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 37819978 - 37819771
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  37819978 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 37819879  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    ||||  |||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||     
T  37819878 acattgttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaa 37819779  T
Q  217 caaaagac 224  Q
    | ||||||    
T  37819778 ccaaagac 37819771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 38859291 - 38859084
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38859291 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggagattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38859192  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| || |    | ||||||||  |||||||||| || |||||||||     
T  38859191 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaaaacaagatgcttccaagaaatattttgatacatttgaagaa 38859092  T
Q  217 caaaagac 224  Q
    | ||||||    
T  38859091 ccaaagac 38859084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 1036424 - 1036518
Alignment:
Q  130 tagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||||||||||||||| | ||||||  ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||| ||||||||    
T  1036424 tagattaaaggaggacgacaagaatattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 1036518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 28885404 - 28885302
Alignment:
Q  122 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaa 221  Q
    ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || ||||||||| | |||    
T  28885404 cttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaagaaccaaa 28885305  T
Q  222 gac 224  Q
    |||    
T  28885304 gac 28885302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 20287401 - 20287437
Alignment:
Q  190 acaaaatattttgttaaatttgaagaccaaaagacaa 226  Q
    |||||||||||||||||||||||||| ||||||||||    
T  20287401 acaaaatattttgttaaatttgaagagcaaaagacaa 20287437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 25048472 - 25048556
Alignment:
Q  131 agattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    ||||||| |||||| | ||||||| |||||| |||| ||||||| |||| | ||   ||| ||||||||||| ||||||||||||    
T  25048472 agattaatggaggacgacaagaagattgtatatgacttgaccaatagttcgttgaaaccataaaatattttgataaatttgaaga 25048556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 6182653 - 6182845
Alignment:
Q  34 tcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtaga 133  Q
    |||||||||| ||||||| |||| |||||| ||||||||| |||||||||||||||| |||||| | | |||||||||| |||| ||||||||  ||| |    
T  6182653 tcttagtagggaaacaaacgattggagattgaatattcttgatggagttcacaaccatgagatgaagccaagtttagaaggacatatgcttgcaagtata 6182752  T
Q  134 ttaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagacaa 226  Q
    |||| ||| | || ||||||  |||||  |||| |||||||||||||||||||| || ||||||||||||||||||| ||||  |||||||||    
T  6182753 ttaagggatggtgacaagaaaattgtacatgacttgaccaagagtttggtgctttcaaaaaatattttgttaaattttaagagaaaaagacaa 6182845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 4976713 - 4976922
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||  |||||| | |||| | |    |||||||||    
T  4976713 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagtttgcaaccatgcgatggagccggctttagaaag 4976812  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  4976813 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 4976912  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  4976913 aacaaaagac 4976922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 18580431 - 18580222
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   ||||||| ||||||||||||||||||||||| |  ||| | |    ||||||| |    
T  18580431 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattaaacattcttaatggagttcacaaccatgcaatgaagccggctttagaatg 18580332  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| | ||||||||||||||| | ||||||| ||||||||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  18580331 acacattcttgccgatagattaaaggaggacgacaagaagattgtatgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 18580232  T
Q  215 accaaaagac 224  Q
    | | ||||||    
T  18580231 aactaaagac 18580222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 4979057 - 4978848
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||| |||||| | |||| | |  | ||||||| |    
T  4979057 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcccaaccatgcgatggagccgactttagaagg 4978958  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| |||||  | ||| ||||||| || | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  4978957 acacattcttgccagcagactaaaggatgacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 4978858  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  4978857 aacaaaagac 4978848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 11502517 - 11502673
Alignment:
Q  68 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacc 167  Q
    ||||||||||||||||||| ||| | |||| | |    ||||||| ||||||| | ||| |||||||||||||| || | ||||||| ||||| |||||     
T  11502517 attcttaatggagttcacacccatgcgatggagccggctttagaaggacacattcatgccggtagattaaaggaagacgacaagaagattgtacgtgact 11502616  T
Q  168 tgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||||||||||   | ||||||||  |||||||||| || ||||||||| ||||||||    
T  11502617 tgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 11502673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 9890982 - 9891189
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  9890982 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 9891081  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || |||||||||     
T  9891082 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaagaa 9891181  T
Q  217 caaaagac 224  Q
    | ||||||    
T  9891182 ccaaagac 9891189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 19072661 - 19072551
Alignment:
Q  114 gacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaa 213  Q
    ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||    
T  19072661 gacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaa 19072562  T
Q  214 gaccaaaagac 224  Q
     | ||||||||    
T  19072561 aaacaaaagac 19072551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 51643603 - 51643392
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagtt-cacaaccaagagatgtaacgaag-tttagaa 112  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || ||||||||||||||| ||||| || | |||| | |   | |||| ||    
T  51643603 tgttcatgattagtggatatcaaagtaagcaaacaaaggaattgagattgaacattcttaatggagtttcacaaacatgcgatggagcccggctttataa 51643504  T
Q  113 agacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttga 212  Q
     ||||||| |||||  |||||||||||||||| | ||||||| ||||| ||||| ||||||||||     ||||| || ||||||||||| || ||||||    
T  51643503 ggacacattcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaaaatgctttcaaaaaatattttgatacatttga 51643404  T
Q  213 agaccaaaagac 224  Q
    ||| ||||||||    
T  51643403 agaacaaaagac 51643392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 3404839 - 3404957
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| |||||  |||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| ||    
T  3404839 tttagaaggacacattcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgata 3404938  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  3404939 catttgaagaaccaaagac 3404957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 41024248 - 41024366
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| |  |||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| ||    
T  41024248 tttagaaggacacattcttgcaggtagattaaaggaggacgaaaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgata 41024347  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  41024348 catttgaagaaccaaagac 41024366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 4769178 - 4769250
Alignment:
Q  105 gtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagag 177  Q
    |||||||| ||||||| ||| | ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||    
T  4769178 gtttagaaggacacattcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 4769250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 17140547 - 17140622
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 90  Q
    ||||||||||| ||| |||||  |||||||||||||| || | | |||| || |||||||||||||||||||||||    
T  17140547 tgttcatggttagtggatatcaaagtaggcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 17140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 49565565 - 49565367
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  49565565 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 49565466  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| | ||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  49565465 acattcttgccgatagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 49565367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 38463821 - 38463731
Alignment:
Q  134 ttaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||||||||||| | ||||||| ||| | ||||| ||||||||||   | |||||||| ||||||||||| || ||||||||  ||||||||    
T  38463821 ttaaaggaggacgacaagaagattgcacgtgacttgaccaagagcaagatgcttccaaaaaatattttgatacatttgaaggacaaaagac 38463731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 17997276 - 17997064
Alignment:
Q  14 atgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaa 113  Q
    ||||||| |||| ||| |||||||||||| |||||||| || | |||||| || |||||| ||| ||||| |||||| | |||| | |    |||||||     
T  17997276 atgttcaaggttagtggatatcttagtagacaaacaaaggaatggagattgaacattcttcatgaagttcgcaaccatgcgatggagccggctttagaag 17997177  T
Q  114 gacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaa 213  Q
    ||||||||||||| |||||||||||||||||||  |||||| ||||| ||||| ||||||||||   ||||||||||  |||||||||| ||||||||||    
T  17997176 gacacatgcttgctggtagattaaaggaggatgataagaagattgtacgtgacttgaccaagagcaaggtgcttccaagaaatattttgataaatttgaa 17997077  T
Q  214 gaccaaaagacaa 226  Q
    || ||||||||||    
T  17997076 gagcaaaagacaa 17997064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 41008083 - 41007874
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||||| |    ||||||| |    
T  41008083 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatgtagccggctttagaatg 41007984  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  41007983 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 41007884  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  41007883 aacaaaagac 41007874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 436292 - 436478
Alignment:
Q  38 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 137  Q
    |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| ||||||| ||||| ||||||||||    
T  436292 agtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaaggacacattcttgccggtagattaa 436391  T
Q  138 aggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||| ||||||||    
T  436392 aggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 12907595 - 12907386
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  12907595 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 12907496  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  ||||||| || || |||||||     
T  12907495 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattctgatacatttgaat 12907396  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  12907395 aacaaaagac 12907386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 11692917 - 11692716
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||  | |  | ||||||| |    
T  11692917 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgtgatcgagccgactttagaagg 11692818  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  11692817 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 11692718  T
Q  215 ac 216  Q
    ||    
T  11692717 ac 11692716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 43949385 - 43949176
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||| ||||||||||||||||||| | || | | |    ||||||| |    
T  43949385 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattattaatggagttcacaaccatgcgaaggagccggctttagaagg 43949286  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| ||||||||| |||||  |||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  43949285 acacattcttgccggtagattaaaggaggacggcaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 43949186  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  43949185 aacaaaagac 43949176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 7263992 - 7264199
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| |||    ||||||| |||    
T  7263992 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatctcatggaaccggctttagaaggac 7264091  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | || |||||  |||||||||| || |||||||||     
T  7264092 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatggttccaagaaatattttgatacatttgaagaa 7264191  T
Q  217 caaaagac 224  Q
    | ||||||    
T  7264192 ccaaagac 7264199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 3802578 - 3802460
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  3802578 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaataaatattttgata 3802479  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  3802478 catttgaagaaccaaagac 3802460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 27275372 - 27275254
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  27275372 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 27275273  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  27275272 catttgaagaaccaaagac 27275254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 24750616 - 24750825
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  24750616 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggatttagaagg 24750715  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||||| ||||||| |||||  |||  ||||| ||||   | ||||||||  |||||||||| || ||||||||    
T  24750716 acacattcttgccggtagattaaaggaggatgacaagaagattgtacatgaattgaccgagagcaagatgcttccaagaaatattttgatacatttgaag 24750815  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  24750816 aacaaaagac 24750825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 34920794 - 34920676
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||| | |||| |||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  34920794 tttagaaggacacattcttaccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 34920695  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| ||||||||    
T  34920694 catttgaagaacaaaagac 34920676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 45476407 - 45476478
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagag 177  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||    
T  45476407 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 45476478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 212542 - 212344
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  212542 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 212443  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  212442 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 212344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 10623555 - 10623357
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  10623555 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 10623456  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  10623455 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 10623357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 5348216 - 5348325
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  5348216 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 5348315  T
Q  206 aatttgaaga 215  Q
     | |||||||    
T  5348316 cacttgaaga 5348325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 41561061 - 41561170
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  41561061 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 41561160  T
Q  206 aatttgaaga 215  Q
     | |||||||    
T  41561161 cacttgaaga 41561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 39794930 - 39795137
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| | |    
T  39794930 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagggc 39795029  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| || ||   | ||||||||  |||||||||| || |||||||||     
T  39795030 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaaagcaagatgcttccaagaaatattttgatacatttgaagaa 39795129  T
Q  217 caaaagac 224  Q
    | ||||||    
T  39795130 ccaaagac 39795137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 38946723 - 38946921
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38946723 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38946822  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| |||||||||||||||||   ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  38946823 acattcttgccggtagattaaaggaggacaacaagaagatcgtacgtgacttgaccaagagcaagatgcttccatgaaatattttgatacacttgaaga 38946921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 34920875 - 34920802
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaac 88  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||    
T  34920875 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaac 34920802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 8400544 - 8400753
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    ||||||||||| ||| ||||||||||||||||||||| || | | |||| || ||| | ||||||||||||||||| | |||| | |    ||||||| |    
T  8400544 tgttcatggttagtggatatcttagtaggcaaacaaaagaatggggattgaacattttcaatggagttcacaaccatgcgatggagccggctttagaagg 8400643  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| |||| |||||||||||||| ||||||| ||||| ||||| ||||||||||   | || | ||| ||||||||||| |||||||||||    
T  8400644 acacattcttgctggtacattaaaggaggatgacaagaagattgtaggtgacttgaccaagagcaagatgttaccaaaaaatattttgataaatttgaag 8400743  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  8400744 aacaaaagac 8400753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 43827720 - 43827500
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| ||||| ||||||||||| ||| |||||||||||| |||||||| || | | |||| || ||||||||||||||||||||||| | || | | | |    
T  43827720 atgtgggtgtttgttcatggttagtggatatcttagtagacaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgaaggagcca 43827621  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgt 203  Q
      ||||||| ||||||| ||| | ||||||||||||||||| |  |||||| ||||| ||||| |||||||| |   | ||||||||  ||||||||||     
T  43827620 gctttagaatgacacattcttaccggtagattaaaggaggacgaaaagaagattgtacgtgacttgaccaagtgcaagatgcttccaagaaatattttga 43827521  T
Q  204 taaatttgaagaccaaaagac 224  Q
    |||||||||||| ||||||||    
T  43827520 taaatttgaagaacaaaagac 43827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 47061841 - 47062050
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||| | |  | ||| ||| |    
T  47061841 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatggagccgacttttgaagg 47061940  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||| ||| ||||||||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  47061941 acacattcttgccggtagattaaaggaggacgacaaaaagattgtatgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 47062040  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  47062041 aacaaaagac 47062050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 18106348 - 18106555
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  18106348 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 18106447  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||  |||||||||| || |||||||||     
T  18106448 acattcttgcaggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaagaa 18106547  T
Q  217 caaaagac 224  Q
    | ||||||    
T  18106548 ccaaagac 18106555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 21799959 - 21800100
Alignment:
Q  4 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 103  Q
    |||| |||| |||||||||||| ||| ||||||||||||| |||||||  | | |||||| || ||| ||||||||||||||||||| | |||| |        
T  21799959 atgtgggtgcatgttcatggttagtggatatcttagtaggaaaacaaagcaatggagattgaacattgttaatggagttcacaaccatgcgatggagtcg 21800058  T
Q  104 agtttagaaagacacatgcttgcgggtagattaaaggaggat 145  Q
      ||||||| |||||||| |||  ||||||||||||||||||    
T  21800059 gctttagaaggacacatgtttgtcggtagattaaaggaggat 21800100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 617850 - 617652
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  617850 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 617751  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  617750 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 617652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 15060662 - 15060780
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| |||||   | ||||||||   ||||||||| ||    
T  15060662 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtaagtgacttgacaaagagcaagatgcttccaaggaatattttgata 15060761  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  15060762 catttgaagaaccaaagac 15060780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 30787499 - 30787697
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30787499 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30787598  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  30787599 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 30787697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 43623236 - 43623038
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  43623236 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 43623137  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  43623136 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 43623038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 45764339 - 45764537
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  45764339 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaatgac 45764438  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  45764439 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 45764537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 20908568 - 20908433
Alignment:
Q  67 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 166  Q
    |||||||||||||||||||||||| |||| |     ||  |||||| | ||||| ||||| || ||||||| |||||||| ||||||| ||||  |||||    
T  20908568 tattcttaatggagttcacaaccatgagacgacggcaatgttagaagggcacattcttgcaggaagattaagggaggatgacaagaagattgtgcgtgac 20908469  T
Q  167 ctgaccaagagtttggtgcttccacaaaatattttg 202  Q
     | ||||||||||||||||  | | |||||||||||    
T  20908468 tttaccaagagtttggtgcaacaaaaaaatattttg 20908433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 42500367 - 42500526
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||||    ||| | |    ||||||| ||     
T  42500367 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggaa 42500466  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaaga 176  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| |||| ||||    
T  42500467 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaga 42500526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 3761964 - 3762062
Alignment:
Q  116 cacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||||||| ||| ||||||| ||| |||| ||| ||| || || || || |||||||||||||| |||  ||| ||||||||||| | |||||||||    
T  3761964 cacatgcttgagggaagattaagggaagatgacaaaaagattctaggtaacttgaccaagagtttgatgcagccaaaaaatattttgatgaatttgaag 3762062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 8194276 - 8194172
Alignment:
Q  122 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaa 221  Q
    |||||||| ||||||| |||||| | ||||||| |||||  |||| ||| ||| |||| ||||   ||| |||||||||||  |||||||||||  ||||    
T  8194276 cttgcgggaagattaatggaggacgacaagaagattgtacatgacttgagcaatagttcggtgaaaccaaaaaatattttgacaaatttgaagaagaaaa 8194177  T
Q  222 gacaa 226  Q
    |||||    
T  8194176 gacaa 8194172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 16794600 - 16794516
Alignment:
Q  131 agattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    ||||||| |||||| | ||||||| |||||  |||| ||||||| |||||||||   ||| |||||||||||  |||||||||||    
T  16794600 agattaatggaggacgacaagaagattgtacatgacttgaccaatagtttggtgaaaccaaaaaatattttgacaaatttgaaga 16794516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 7168858 - 7169067
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    ||||||||||| ||| |||||  |||||||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |  | ||||||| |    
T  7168858 tgttcatggttagtggatatcaaagtaggcaaacaaaggagtggggattgaacattcttaatggagttcacaaccatgcgatggagccgactttagaagg 7168957  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    | |||| |||||  |||||||||||||||| | ||||| | ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  7168958 atacattcttgctagtagattaaaggaggacgacaagatgattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 7169057  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  7169058 aacaaaagac 7169067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 35965848 - 35965639
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  35965848 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 35965749  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  35965748 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 35965649  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  35965648 aacaaaagac 35965639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 39752131 - 39751922
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| |||||||||||| | | |||| || ||||||||||||||||||||||| |  ||| |||    ||||||| |    
T  39752131 tgttcatgattggtggatatcaaagtaagcaaacaaatgaatggggattgaacattcttaatggagttcacaaccatgcaatggaaccggctttagaatg 39752032  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    ||| ||   ||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || ||||||||    
T  39752031 acatatttatgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 39751932  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  39751931 aacaaaagac 39751922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 45455334 - 45455540
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | ||||  | ||||||||||||||| ||||||| | |||| | |  | ||||||| |    
T  45455334 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattggacattcttaatggagttaacaaccatgcgatggagccgactttagaagg 45455433  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||     ||||||||  |||||||||| || ||||||||    
T  45455434 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaaaatgcttccaagaaatattttgatacatttgaag 45455533  T
Q  215 accaaaa 221  Q
    | |||||    
T  45455534 aacaaaa 45455540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 43689274 - 43689065
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| |      ||||||| |    
T  43689274 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggatttaacattcttaatggagttcacaaccatgcgatggagtcggctttagaagg 43689175  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||| ||||||||||| ||||| | ||||||| ||||| ||||| ||||||||||   | |||||| |  |||||||||| || ||||||||    
T  43689174 acacattcttgccggtagattaaaagaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttcgaagaaatattttgatacatttgaag 43689075  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  43689074 aacaaaagac 43689065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 14401825 - 14401676
Alignment:
Q  67 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgta--tgtg 164  Q
    |||||||||||||||||||||||| ||  ||   | |||||||||| | ||||| ||||| || ||||||| ||| |||| ||||||| |||||  | ||    
T  14401825 tattcttaatggagttcacaaccatgaattggtgccaagtttagaatggcacattcttgcaggaagattaagggatgatgacaagaagattgtacatatg 14401726  T
Q  165 acctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    || ||||||||||||||||||  ||| ||||||||||| | |||||||||    
T  14401725 acttgaccaagagtttggtgccaccaaaaaatattttgatgaatttgaag 14401676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 22580914 - 22581048
Alignment:
Q  68 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacc 167  Q
    ||||||||||||||| ||||||| | |||| | |  | ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| |||||     
T  22580914 attcttaatggagtttacaaccatgcgatggagccgactttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgact 22581013  T
Q  168 tgaccaagagtttggtgcttccacaaaatattttg 202  Q
    ||||||||||   | ||||||||  ||||||||||    
T  22581014 tgaccaagagcaagatgcttccaagaaatattttg 22581048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 2146070 - 2145948
Alignment:
Q  38 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 137  Q
    |||| |||||||||||| | |||||| || ||| ||||||||||||||||||| | |||| | |  | ||||||| |||| || ||||| ||||||||||    
T  2146070 agtaagcaaacaaatgaatggagattgaacatttttaatggagttcacaaccatgcgatggagccgactttagaaggacatattcttgccggtagattaa 2145971  T
Q  138 aggaggatggcaagaagcttgta 160  Q
    ||||||| | ||||||| |||||    
T  2145970 aggaggacgacaagaagattgta 2145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 1115821 - 1115939
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  1115821 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatagtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 1115920  T
Q  206 aatttgaagaccaaaagac 224  Q
     | ||||||| | ||||||    
T  1115921 caattgaagaaccaaagac 1115939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 7341039 - 7341237
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  7341039 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 7341138  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  7341139 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 7341237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 8422957 - 8422759
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | ||||||| ||||||||||||||||||||| |    ||| | |    ||||||| |||    
T  8422957 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattaaacattcttaatggagttcacaactatcccatggagccggctttagaatgac 8422858  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  8422857 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 8422759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 30304711 - 30304513
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30304711 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30304612  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  30304611 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 30304513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 32378009 - 32377811
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  32378009 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 32377910  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  32377909 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 32377811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 32431966 - 32431768
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  32431966 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 32431867  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  32431866 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 32431768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 18606954 - 18607163
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 114  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |  | ||||||| |    
T  18606954 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccgactttagaagg 18607053  T
Q  115 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaag 214  Q
    |||||| ||||  | ||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||     
T  18607054 acacattcttgtcgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaat 18607153  T
Q  215 accaaaagac 224  Q
    | ||||||||    
T  18607154 aacaaaagac 18607163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 24220128 - 24220335
Alignment:
Q  19 catggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacac 118  Q
    ||||||| ||| ||||||||||||| |||||||||| | | |||| || |||||||||| |||||||||||| | |||| |      ||||||| |||||    
T  24220128 catggttagtggatatcttagtaggaaaacaaatgaatggggattgaaaattcttaatgcagttcacaaccatgcgatggagtcggctttagaaggacac 24220227  T
Q  119 atgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagag--tttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    || ||||  ||||||||||||||||| | ||||||  || || ||||| ||||||||||  |  | ||||||||  |||||||||| |||||||||| |     
T  24220228 attcttgtcggtagattaaaggaggacgacaagaaaattatacgtgacttgaccaagagcataagatgcttccaagaaatattttgataaatttgaaaaa 24220327  T
Q  217 caaaagac 224  Q
    ||||||||    
T  24220328 caaaagac 24220335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 31147333 - 31147489
Alignment:
Q  68 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacc 167  Q
    ||||||||||||||||||||||| | |||| | |  | ||||||| ||||||| ||||| ||||||||||||||| ||| ||||||| ||||| |||||     
T  31147333 attcttaatggagttcacaaccatgcgatggagccgactttagaaggacacattcttgccggtagattaaaggagaatgacaagaagattgtacgtgact 31147432  T
Q  168 tgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagaccaaaagac 224  Q
    ||| ||||||   | ||||||||   ||||||||  || ||||||||| ||||||||    
T  31147433 tgatcaagagcaagatgcttccaagtaatatttttatacatttgaagaacaaaagac 31147489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 28250856 - 28251063
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | | |  ||||||| |||    
T  28250856 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccagctttagaaggac 28250955  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| | ||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||     
T  28250956 acattcttgccgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaa 28251055  T
Q  217 caaaagac 224  Q
    | ||||||    
T  28251056 ccaaagac 28251063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 21358359 - 21358241
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| |||||  |||| ||||||||||   | ||||||||  |||||||||| ||    
T  21358359 tttagaaggacacattcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgata 21358260  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| ||||||||    
T  21358259 catttgaagaacaaaagac 21358241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 23962341 - 23962223
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| |||||  |||| ||||||||||   | ||||||||  |||||||||| ||    
T  23962341 tttagaaggacacattcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgata 23962242  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| ||||||||    
T  23962241 catttgaagaacaaaagac 23962223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 1611852 - 1611654
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  1611852 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 1611753  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  1611752 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 1611654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 34111713 - 34111598
Alignment:
Q  67 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 166  Q
    |||||||||||||||||||||||| ||||||   | ||  |||||| |  | || ||||| || ||||||||||| |||| | ||||| ||||| |||||    
T  34111713 tattcttaatggagttcacaaccatgagatggcgccaaagttagaagggaaaattcttgcaggaagattaaaggaagatgactagaagattgtacgtgac 34111614  T
Q  167 ctgaccaagagtttgg 182  Q
     |||||||||||||||    
T  34111613 ttgaccaagagtttgg 34111598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 35243561 - 35243636
Alignment:
Q  15 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 90  Q
    |||||||| || ||| |||||  |||| |||||||||||| | | |||| || |||||||||||||||||||||||    
T  35243561 tgttcatgattagtggatatcaaagtaagcaaacaaatgaatggggattgaacattcttaatggagttcacaacca 35243636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 13387795 - 13387722
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 90  Q
    |||||| |||||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    
T  13387795 ttcatgattcgtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 13387722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 16369 - 16251
Alignment:
Q  106 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgtta 205  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||| ||||||||||   | ||||||||  |||||||||| ||    
T  16369 tttagaaggacacattcttgccggtagattaaaggaggaagacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 16270  T
Q  206 aatttgaagaccaaaagac 224  Q
     ||||||||| | ||||||    
T  16269 catttgaagaaccaaagac 16251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 1841 - 2048
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  1841 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 1940  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaagac 216  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || |||||||||     
T  1941 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaa 2040  T
Q  217 caaaagac 224  Q
    | ||||||    
T  2041 ccaaagac 2048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 33769 - 33967
Alignment:
Q  17 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 116  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  33769 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 33868  T
Q  117 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacctgaccaagagtttggtgcttccacaaaatattttgttaaatttgaaga 215  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||| ||||||||||   | ||||||||  |||||||||| || | |||||||    
T  33869 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 33967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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