View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_219 (Length: 236)
Name: NF7708A_low_219
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_219 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 31115423 - 31115218
Alignment:
| Q |
10 |
gataaaataaccttagaatgatgttcaaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatt |
109 |
Q |
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| T |
31115423 |
gataacataaccttagaatgatgttcaaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaaaatgttcattttggaataatt |
31115324 |
T |
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| Q |
110 |
taaagaaactaaacgaaacatgagaaagagagcaaatataatacaaacgtcggccaaaaggccaacaacgtatatttgtacataacatatggaaagatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
31115323 |
taaagaaactaaacgaaacatgagaaagagagcaaatataatacaaacatcggccaaaaggcccacaacgtatatttgtacataacatatgggaagatat |
31115224 |
T |
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| Q |
210 |
gcctat |
215 |
Q |
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|||||| |
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| T |
31115223 |
gcctat |
31115218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 31072460 - 31072538
Alignment:
| Q |
35 |
caaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaa |
113 |
Q |
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| T |
31072460 |
caaaagataaacaagttatgcttaaaataaaatttgcaatagctaatctattaacatgttcattttggaataacttaaa |
31072538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 31030357 - 31030438
Alignment:
| Q |
39 |
ggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaagaaacta |
120 |
Q |
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| T |
31030357 |
ggataaacaacttatgcttaaaatataacttggcatagctaatctattaacacgttcgttttggaataatttgaagaaacta |
31030438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 31073901 - 31073980
Alignment:
| Q |
35 |
caaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaag |
114 |
Q |
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||||| ||||||| |||||||||||||| | |||| |||| |||||||||||||| ||| |||||||||||||||||| |
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| T |
31073901 |
caaagcataaacaacttatgcttaaaatataacttgccataactaatctattaacacgttagttttggaataatttaaag |
31073980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 31040280 - 31040366
Alignment:
| Q |
34 |
tcaaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaagaaacta |
120 |
Q |
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||||| |||||||| ||| |||||| |||||| | || |||| ||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
31040280 |
tcaaaagataaacaagttttgcttacaataaaacctgccataaataatctattaacacgttcaatttagaataatttaaagaaacta |
31040366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 33559640 - 33559725
Alignment:
| Q |
35 |
caaaggataaacatgttatgcttaaaataaagcttgtcatagctaatctattaacatgttcattttggaataatttaaagaaacta |
120 |
Q |
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|||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33559640 |
caaaagataaacaagttatgcttaaaataaaatttgccatagctaatctattaacacgttcattttggaataatttaaagaaacta |
33559725 |
T |
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