View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_22 (Length: 436)
Name: NF7708A_low_22
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 52582636 - 52582216
Alignment:
| Q |
7 |
ggtcatgttgttgatgtatggagtgttggttcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtacaaa |
106 |
Q |
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| T |
52582636 |
ggtcatgttgttgatgtatggagtgttggttcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtacaaa |
52582537 |
T |
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| Q |
107 |
gaagagtttggagactcttcggaagactccaacccaccagctaacaattttatgtcaagggaagatgtcactgtggaggattaggacttagaagtgaat- |
205 |
Q |
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| T |
52582536 |
gaagagtttggagactcttcggaagactccaacccgccagctaacaattttatgtcaagggaagatagcactgtggaggattaggacttagaagtgaatt |
52582437 |
T |
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| Q |
206 |
-------ctatgaagatagaaagaattttgtttgagaaatttcaaaatcaggagataatattattatgtaacatgacaaaatgatccaatgtgtcttcag |
298 |
Q |
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| T |
52582436 |
atataacctatgaagataaaaagaattttgtttgagaaatttcaaaatcaggagagaatattattatgtaacatgacaaaatgatccaatgtgtcttcag |
52582337 |
T |
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| Q |
299 |
gtgaatttacagtttttgaaattcatgacttatgatgctctttagattagtaaccagacatcattcgttttgacatttcctcgtagccatgtcagattga |
398 |
Q |
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| T |
52582336 |
gtgaatttacagtttttgaaattcatgacttatgatgctctttagattagtaaccagacatcattcgttttgacatttcctcgtagccatgtcagattga |
52582237 |
T |
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| Q |
399 |
tatttatatactactccctcc |
419 |
Q |
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| T |
52582236 |
tatttatatactactccctcc |
52582216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 52590775 - 52590698
Alignment:
| Q |
37 |
tcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtacaaagaagagtt |
114 |
Q |
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| T |
52590775 |
tcaggtggcaaattggttcattaatgcacgtgtgcgtctttggaaaccaatggttgaagaaatatacaaagaagagtt |
52590698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 7301740 - 7301660
Alignment:
| Q |
37 |
tcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtacaaagaagagtttgg |
117 |
Q |
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| T |
7301740 |
tcaggtggcgaattggttcattaatgcgagggtgcgtctttggaaaccaatggtcgaagaaatgtacaaagaagagtttgg |
7301660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 6084639 - 6084577
Alignment:
| Q |
37 |
tcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaat |
99 |
Q |
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| T |
6084639 |
tcaggtgtcaaattggttcataaatgcaagagtaaggctttggaaaccaatggtggaagaaat |
6084577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 33462834 - 33462901
Alignment:
| Q |
36 |
ttcaggtgtcaaactggttcattaatgcaagggtacggctatggaaaccaatgatagaagaaatgtac |
103 |
Q |
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| T |
33462834 |
ttcaggtatcaaactggttcattaatgctagggttcgattgtggaaacccatggtagaagatatgtac |
33462901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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