View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_221 (Length: 235)
Name: NF7708A_low_221
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_221 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 51184458 - 51184241
Alignment:
| Q |
1 |
agacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctag |
100 |
Q |
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| T |
51184458 |
agacagtagatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctag |
51184359 |
T |
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| Q |
101 |
tggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccctgatcgtgtcatagccttctat |
200 |
Q |
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| T |
51184358 |
tggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctat |
51184259 |
T |
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| Q |
201 |
gaaaaagtgagtgtattt |
218 |
Q |
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| T |
51184258 |
gaaaaagtgagtgtattt |
51184241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14172653 - 14172870
Alignment:
| Q |
1 |
agacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctag |
100 |
Q |
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| T |
14172653 |
agacagtagatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcataggtggctctatagtaactgcttccgttgaagatcctag |
14172752 |
T |
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| Q |
101 |
tggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccctgatcgtgtcatagccttctat |
200 |
Q |
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| T |
14172753 |
tggttataggtttaagcttttggagagaagaactactcgtgaacccttatgcaaagtgatgcttcgagtaggtgaccttgatcgtgtcatagccttctat |
14172852 |
T |
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| Q |
201 |
gaaaaagtgagtgtattt |
218 |
Q |
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| T |
14172853 |
gaaaaagtgagtgtattt |
14172870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 48010932 - 48011035
Alignment:
| Q |
115 |
agcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccctgatcgtgtcatagccttctatgaaaaagtgagtgt |
214 |
Q |
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| T |
48010932 |
agcttttggggtgaagacctgctcgcgaacccctatgcaaagtgatgcttcaagtaggcggccttgatcgtgtcgtagccttctatgaataagtgagttt |
48011031 |
T |
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| Q |
215 |
attt |
218 |
Q |
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|||| |
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| T |
48011032 |
attt |
48011035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 842 - 1050
Alignment:
| Q |
10 |
atattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttatag |
109 |
Q |
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|||||||||||| ||| |||||||||||| ||||||| | | |||| |||| ||| |||| ||||||||||| ||||||||||||||||| |||| |
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| T |
842 |
atattgtaaaggaaaaatggggaaaggttatgagagaactggagcctgttaaagatggttctacagtaactgcttttattgaagatcctagtggtgatag |
941 |
T |
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| Q |
110 |
gtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccctgatcgtgtcatagccttctatgaaaaagtg |
209 |
Q |
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|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || || | ||| |||| |||||||||||||||||||||||||| |
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| T |
942 |
gtttgagcttttggggagaagacttactcgtgaacccttatgcaaagtgatgcttcaagcagacaaccttgattgtgtcatagccttctatgaaaaagtg |
1041 |
T |
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| Q |
210 |
agtgtattt |
218 |
Q |
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||||||||| |
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| T |
1042 |
agtgtattt |
1050 |
T |
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