View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_224 (Length: 234)
Name: NF7708A_low_224
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_224 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 32060459 - 32060233
Alignment:
| Q |
8 |
tgagatgaacacaaaggtcagaacaaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagc |
107 |
Q |
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| T |
32060459 |
tgagaagaacacaaaggtcagaacgaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagc |
32060360 |
T |
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| Q |
108 |
attttattctttgagcccctcccatttccaaacattattccaagtagagatacatcaatgtgacatatcgtctaactactattgttaggaggaattttga |
207 |
Q |
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| T |
32060359 |
attttattctttgagcccctcccatttccaaacattattccaagtagacatacatcaatgtgacacatcgtctaactactattgttaggaggaattttga |
32060260 |
T |
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| Q |
208 |
taagcaaatcattagttttgataccat |
234 |
Q |
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| T |
32060259 |
tacgcaaatcattagttttgataccat |
32060233 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 37258096 - 37258011
Alignment:
| Q |
72 |
tcttcaatccatcattataaagcaaccaaacaaagcattttattctttga-gcccctcccatttccaaacattattccaagtagag |
156 |
Q |
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| T |
37258096 |
tcttcaatccataattgtaaagcagccaaagaaagcattttattttttgaggctcctctcattttcaaacattattccaggtagag |
37258011 |
T |
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