View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_23 (Length: 423)
Name: NF7708A_low_23
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 11592414 - 11592817
Alignment:
| Q |
14 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592414 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11592513 |
T |
|
| Q |
114 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11592514 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11592613 |
T |
|
| Q |
214 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctcttccccttt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
11592614 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11592713 |
T |
|
| Q |
314 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592714 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
11592813 |
T |
|
| Q |
414 |
ttac |
417 |
Q |
| |
|
|||| |
|
|
| T |
11592814 |
ttac |
11592817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 11645705 - 11645302
Alignment:
| Q |
14 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645705 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11645606 |
T |
|
| Q |
114 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11645605 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11645506 |
T |
|
| Q |
214 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctcttccccttt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
11645505 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11645406 |
T |
|
| Q |
314 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645405 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
11645306 |
T |
|
| Q |
414 |
ttac |
417 |
Q |
| |
|
|||| |
|
|
| T |
11645305 |
ttac |
11645302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 156 - 417
Target Start/End: Complemental strand, 37181056 - 37180796
Alignment:
| Q |
156 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
254 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
255 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctcttcc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
353 |
Q |
| |
|
| ||||||||||| | ||||||||||||| || ||||||||||| | || |||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
354 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttac |
417 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttac |
37180796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University