View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_256 (Length: 227)
Name: NF7708A_low_256
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_256 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 1047305 - 1047111
Alignment:
| Q |
16 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataacgcgttcgtgaagactaagcgtttggttcaaa |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1047305 |
gacatcacaatcatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaa |
1047206 |
T |
|
| Q |
116 |
taagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaactacaacagttgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1047205 |
taagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgt |
1047111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 1072118 - 1071951
Alignment:
| Q |
16 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataacgcgttcgtgaagactaagcgtttggttcaaa |
115 |
Q |
| |
|
||||||||||| || |||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1072118 |
gacatcacaatcattttttggtactgactgaatatcgctccaagtgttgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaa |
1072019 |
T |
|
| Q |
116 |
taagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
183 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1072018 |
taagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcac |
1071951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 1087779 - 1087612
Alignment:
| Q |
16 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataacgcgttcgtgaagactaagcgtttggttcaaa |
115 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||| |||||||||||| ||| |||||| |||| |||| |||||| || ||||| |||||||||||| |
|
|
| T |
1087779 |
gacatcacaatcatcttttggcaacgactcaataacactccaagtatcgtcttctggaatccaattaacacgttcgcgatgactagttgtttggttcaaa |
1087680 |
T |
|
| Q |
116 |
taagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1087679 |
taagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcac |
1087612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 1104244 - 1104165
Alignment:
| Q |
104 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1104244 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcac |
1104165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University