View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_257 (Length: 227)
Name: NF7708A_low_257
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_257 |
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| [»] scaffold0210 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: scaffold0210 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 11301 - 11488
Alignment:
| Q |
17 |
aaagataaggagggcaaccggcacagacttcatcatatctttggttgtagatgatttttctggttccagcaatccgtatgtttgaaaactcagatctaac |
116 |
Q |
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| T |
11301 |
aaagataaggagggcaaccggcacagacttcatcatatctttggttgtagatgatatttctcgttccagcaatccatatgtttgaaaactcagatgtaac |
11400 |
T |
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| Q |
117 |
atttcagaaaacaatttcactatatatgacattgacagtacctccacacggagctggaaatcaaccaaatagcttgtctccaatttaa |
204 |
Q |
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| T |
11401 |
atttcgggaaacaatttcactatatatgacattgacagtacctccacacgaagctggaaatcaaccaaatagtttgtctccaatttaa |
11488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 3327 - 3376
Alignment:
| Q |
35 |
cggcacagacttcatcatatctttggttgtagatgatttttctggttcca |
84 |
Q |
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| T |
3327 |
cggcacagacttcatcatatcaatggttgcagatgattcttctcgttcca |
3376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 12713564 - 12713480
Alignment:
| Q |
17 |
aaagataaggagggcaaccggcacagacttcatcatatctttggttgtagatgatttttctggttccagcaatccgtatgtttga |
101 |
Q |
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| T |
12713564 |
aaagataaggagggcaaccggcacagacttcatcatatctttggttgtagatgatttttctcgttccagcaatctgtatgtttga |
12713480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 12713483 - 12713427
Alignment:
| Q |
148 |
ttgacagtacctccacacggagctggaaatcaaccaaatagcttgtctccaatttaa |
204 |
Q |
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| T |
12713483 |
ttgacagtaccaccacacggagctggaaatcaaccaaatagcttgtctccaatttaa |
12713427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 12721341 - 12721292
Alignment:
| Q |
35 |
cggcacagacttcatcatatctttggttgtagatgatttttctggttcca |
84 |
Q |
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| T |
12721341 |
cggcacagacttcatcatatcaatggttgcagatgattcttctcgttcca |
12721292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 7878813 - 7878721
Alignment:
| Q |
17 |
aaagataaggagggcaaccggcacagacttcatcatatctttggttgtagatgatttttctggttccagcaatccgtatgtttgaaaactcag |
109 |
Q |
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| T |
7878813 |
aaagataaggagggcaaccggcactgacttcatcatatctttggttgctgatgatttttctcgttccagcaatgcgtatgttggaaaactcag |
7878721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 12756 - 12805
Alignment:
| Q |
35 |
cggcacagacttcatcatatctttggttgtagatgatttttctggttcca |
84 |
Q |
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| T |
12756 |
cggcacagacttcatcatatctttggttgcagatgattcttctcgttcca |
12805 |
T |
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