View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_26 (Length: 416)
Name: NF7708A_low_26
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 33102501 - 33102087
Alignment:
| Q |
1 |
tgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102501 |
tgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaag |
33102402 |
T |
|
| Q |
101 |
cagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102401 |
cagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccac |
33102302 |
T |
|
| Q |
201 |
aacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102301 |
aacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagatt |
33102202 |
T |
|
| Q |
301 |
gtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102201 |
gtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacc |
33102102 |
T |
|
| Q |
401 |
tatagttcatggcat |
415 |
Q |
| |
|
||||||||||||||| |
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|
| T |
33102101 |
tatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 266
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
57 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
156 |
Q |
| |
|
|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
157 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
256 |
Q |
| |
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| |||||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || | |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
|
| Q |
257 |
ttcccataac |
266 |
Q |
| |
|
|||||||||| |
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|
| T |
52716531 |
ttcccataac |
52716522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
61 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
122 |
Q |
| |
|
|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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|
| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 410
Target Start/End: Original strand, 10838590 - 10838990
Alignment:
| Q |
10 |
ccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagttt |
109 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || ||||| || |||| |
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|
| T |
10838590 |
ccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatggaagccgcggttt |
10838689 |
T |
|
| Q |
110 |
caggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaac |
209 |
Q |
| |
|
| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
10838690 |
ctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaaccacaacttgaac |
10838789 |
T |
|
| Q |
210 |
cataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatcatc |
309 |
Q |
| |
|
||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || |||||||| |||||| |
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|
| T |
10838790 |
cattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaagattgttatcatc |
10838889 |
T |
|
| Q |
310 |
cactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagttca |
409 |
Q |
| |
|
|| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || |||||||| |||||| |
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| T |
10838890 |
cattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatgaacctgaagttca |
10838989 |
T |
|
| Q |
410 |
t |
410 |
Q |
| |
|
| |
|
|
| T |
10838990 |
t |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 34971234 - 34971055
Alignment:
| Q |
60 |
agaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaaga |
159 |
Q |
| |
|
||||| ||||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | | |
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|
| T |
34971234 |
agaaagaacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaa |
34971135 |
T |
|
| Q |
160 |
aacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
239 |
Q |
| |
|
||||| | ||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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|
| T |
34971134 |
aacaacatcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
168 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
267 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
268 |
aaagtgtt |
275 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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