View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_271 (Length: 220)
Name: NF7708A_low_271
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_271 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 7839787 - 7839613
Alignment:
| Q |
26 |
gagatgaaagggaaaactgtttttgttatattttataaggtggaagcttctgatgttagacatcaaagaaagagctatgaaattgcaatgattcaacgtg |
125 |
Q |
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| T |
7839787 |
gagatgaaagggaaaactgtttttgttatattttataaggtggaagcttctgatgttagacatcagagaaagagctatgaaattgcaatgattcaacatg |
7839688 |
T |
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| Q |
126 |
aaaagagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttggaaagagtttgtgctcttagtg |
200 |
Q |
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| T |
7839687 |
aaaagagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttgaaaagagtttgtgctcttagtg |
7839613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 7763098 - 7762944
Alignment:
| Q |
47 |
tttgttatattttataaggtggaagcttctgatgttagaca-tcaaagaaagagctatgaaattgcaatgattcaacgtgaaaagagatttggaaaggaa |
145 |
Q |
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| T |
7763098 |
tttgttattttttataagatagaaccttcagatgttaggtagtcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaa |
7762999 |
T |
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| Q |
146 |
tcggagaaggtgaagaaatggaggtctgctttggaaagagtttgtgctcttagtg |
200 |
Q |
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| T |
7762998 |
tcggagaaggtgaaagcatggaggttggctttgaatcgtgtttgtgctctcagtg |
7762944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 7755567 - 7755491
Alignment:
| Q |
124 |
tgaaaagagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttggaaagagtttgtgctcttagtg |
200 |
Q |
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| T |
7755567 |
tgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtg |
7755491 |
T |
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