View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_282 (Length: 215)
Name: NF7708A_low_282
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_282 |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0132 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 1782 - 1959
Alignment:
| Q |
18 |
gtatatagctggaacacctaaaaccaaaccaacacccgactaacccgatcaacatgaagcaacggaagaac---ttaagaatctgcacaaaccacactaa |
114 |
Q |
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| T |
1782 |
gtatataggtggaacacctaaaatcaaaccaacacccgacttacccgatcaacatgaagcaacggaagaacgtcttaagaatctgcacaaaccacactaa |
1881 |
T |
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| Q |
115 |
agaaccacaaaaaatcaaaacaatatccgcgacataacaaccaacaccagaccaataaataaagagcaagtataattt |
192 |
Q |
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| T |
1882 |
agcaccacaaaaaatcaaaacaatatccgcgacataacaaccaacaccagaccaataaataaagagcaattataattt |
1959 |
T |
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Target: scaffold0132; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 9742 - 9919
Alignment:
| Q |
18 |
gtatatagctggaacacctaaaaccaaaccaacacccgactaacccgatcaacatgaagcaacggaagaac---ttaagaatctgcacaaaccacactaa |
114 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9742 |
gtatataggtggaacacctaaaatcaaaccaacacccgacttacccgatcaacatgaagcaacggaagaacgtcttaagaatctgcacaaaccacactaa |
9841 |
T |
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| Q |
115 |
agaaccacaaaaaatcaaaacaatatccgcgacataacaaccaacaccagaccaataaataaagagcaagtataattt |
192 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9842 |
agcaccacaaaaaatcaaaacaatatccgcgacataacaaccaacaccagaccaataaataaagagcaattataattt |
9919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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