View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_284 (Length: 214)
Name: NF7708A_low_284
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_284 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 40010 - 40183
Alignment:
| Q |
20 |
tgaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctc |
119 |
Q |
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| T |
40010 |
tgaagcagcaaaacgacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctc |
40109 |
T |
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| Q |
120 |
aaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatct |
193 |
Q |
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| T |
40110 |
aaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatct |
40183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 33391 - 33511
Alignment:
| Q |
22 |
aagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctcaa |
121 |
Q |
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| T |
33391 |
aagcagcaaaacgacgtggggtcgaggatctctatctatgcatggtagaagtgaccttgtcgcctaccattttcgtgtgtgaaacacttgtggttctcaa |
33490 |
T |
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| Q |
122 |
attggatagattaaatgtacc |
142 |
Q |
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| T |
33491 |
attggatagaataattgtacc |
33511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 21734 - 21826
Alignment:
| Q |
21 |
gaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtg |
113 |
Q |
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| T |
21734 |
gaagaagcaaaacgacgtggggtcgaggatctctatctaaacttgttagaagtgaccttgtcgcctaccattttcgtttgtagaacacttgtg |
21826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 19970313 - 19970209
Alignment:
| Q |
84 |
cctaccattttcgtgtgtgaaacacttgtggtcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaa |
183 |
Q |
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| T |
19970313 |
cctaccattttctgctgtgaaacacttgtggttctgaaattgtttagcatacatgtaacaactatgtttcgttcttctgttgatcttccttcgctcaaaa |
19970214 |
T |
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| Q |
184 |
ccctt |
188 |
Q |
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||||| |
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| T |
19970213 |
ccctt |
19970209 |
T |
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