View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_29 (Length: 412)
Name: NF7708A_low_29
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 69 - 407
Target Start/End: Original strand, 31251816 - 31252154
Alignment:
| Q |
69 |
taacattaaacctgttattttacatactaagtcatnnnnnnnnnnnnnncaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactcta |
168 |
Q |
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| T |
31251816 |
taacattaaacctgttattttacatactaagtcataaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattcta |
31251915 |
T |
|
| Q |
169 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
268 |
Q |
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| T |
31251916 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
31252015 |
T |
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| Q |
269 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatc |
368 |
Q |
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| T |
31252016 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatc |
31252115 |
T |
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| Q |
369 |
agggccaacattaatttgtgatgcaggagagatggattt |
407 |
Q |
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| T |
31252116 |
agggccaacattaatttgtgatgcaggagagatggattt |
31252154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 118 - 407
Target Start/End: Complemental strand, 25815278 - 25814990
Alignment:
| Q |
118 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
217 |
Q |
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| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
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| Q |
218 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaa |
317 |
Q |
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| T |
25815178 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa |
25815079 |
T |
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| Q |
318 |
ttagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatggattt |
407 |
Q |
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| T |
25815078 |
-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgtaatgcaagagagatggattt |
25814990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25815401 - 25815373
Alignment:
| Q |
1 |
aagaaacgggagatttcatattaaataat |
29 |
Q |
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| T |
25815401 |
aagaaacgggagatttcatattaaataat |
25815373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31251748 - 31251776
Alignment:
| Q |
1 |
aagaaacgggagatttcatattaaataat |
29 |
Q |
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| T |
31251748 |
aagaaacgggagatttcatattaaataat |
31251776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 263 - 407
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
263 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
362 |
Q |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
363 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
407 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
182 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
232 |
Q |
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|||| |||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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