View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_292 (Length: 210)
Name: NF7708A_low_292
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_292 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 20217515 - 20217685
Alignment:
| Q |
21 |
atagattgttagtatatagacatgtaatttgaattgagacaaaaatgaaaaataa-tggagtaatacatctgtacaaactgcaacgaaaaaaggtctatt |
119 |
Q |
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| T |
20217515 |
atagattgttagtatatagacaggtaatttgaattcagataaaaatgaaaaaaaaatggagtaatacatctgtacaaactgcaacgaaaaaaggtctatt |
20217614 |
T |
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| Q |
120 |
agattcaagtgtcatgtttggagtgacgctgcaattgactgatatttgatctggttgtattatagttatag |
190 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20217615 |
agattcaagtgtcatgattggagtcacgctgcaattgactgatgtttgatctggttgtattatagttatag |
20217685 |
T |
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