View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_294 (Length: 209)
Name: NF7708A_low_294
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_294 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 50407626 - 50407819
Alignment:
| Q |
16 |
aattggaaccccactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtt |
115 |
Q |
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| T |
50407626 |
aattggaacctcacttggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtt |
50407725 |
T |
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| Q |
116 |
tctgaacatgttttaacaaagtacaaatttccacgaccactcatgttcacattgattatgtttttatcctgtatcggtcacttattgatagcct |
209 |
Q |
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| T |
50407726 |
tctgaacatgttttaacaaagtacaaatttccacgaccactcatgttcacattgattatgtttttatcctgtgtcggtcacttattgatagcct |
50407819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 50385614 - 50385728
Alignment:
| Q |
33 |
gatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaac |
132 |
Q |
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| T |
50385614 |
gatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaac |
50385713 |
T |
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| Q |
133 |
aaagtacaaatttcc |
147 |
Q |
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| T |
50385714 |
aaagtacagatttcc |
50385728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 50390759 - 50390873
Alignment:
| Q |
33 |
gatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaac |
132 |
Q |
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| T |
50390759 |
gatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaac |
50390858 |
T |
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| Q |
133 |
aaagtacaaatttcc |
147 |
Q |
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| T |
50390859 |
aaagtacagatttcc |
50390873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 50394033 - 50394147
Alignment:
| Q |
33 |
gatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaac |
132 |
Q |
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| T |
50394033 |
gatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaac |
50394132 |
T |
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| Q |
133 |
aaagtacaaatttcc |
147 |
Q |
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| T |
50394133 |
aaagtacagatttcc |
50394147 |
T |
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