View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_299 (Length: 207)
Name: NF7708A_low_299
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_299 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 22632700 - 22632527
Alignment:
| Q |
15 |
caagaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatctttt |
114 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||| |||||||| | |
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| T |
22632700 |
caagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacaatcttct |
22632601 |
T |
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| Q |
115 |
gatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaatagcttacaagat |
188 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
22632600 |
gatcctggatgtgctactggagctattgacttggtgaaaactaagattcttcgtctccaaattgctgacaagat |
22632527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 22468783 - 22468610
Alignment:
| Q |
15 |
caagaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatctttt |
114 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||| ||| |||||| |||||||| | |
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| T |
22468783 |
caagaaaatcaaagacatgatcaagcagctgatagaagcatcttatcacatagaagatgtggttgatgattatatcttacttgaggaacaacaatcttct |
22468684 |
T |
|
| Q |
115 |
gatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaatagcttacaagat |
188 |
Q |
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| T |
22468683 |
gatcctggatgtgctgctggtgctgttgacttggtgaaaactaagatccttcgtctccaaataacttacaagat |
22468610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 22631304 - 22631131
Alignment:
| Q |
15 |
caagaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatctttt |
114 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||| | |||||| ||| || | |
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| T |
22631304 |
caagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatcttccatgaggaacaacatgctcct |
22631205 |
T |
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| Q |
115 |
gatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaatagcttacaagat |
188 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22631204 |
gatcctggatgtgctgctggagccgttgacttggtgaaaactaagattcttcgtctccaaattgcttacaagat |
22631131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 22431965 - 22431813
Alignment:
| Q |
33 |
gatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatcttttgatcctggatgtgctgct |
132 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||| |||||||||||| |||||| |
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| T |
22431965 |
gatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgct |
22431866 |
T |
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| Q |
133 |
ggagctgttgacttggtgaaaactaagattcttcgtctccaaatagcttacaagat |
188 |
Q |
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|| | |||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
22431865 |
gg---tcttgacttgatcaaaactaagattcttcgtctccaaatagcttacaagat |
22431813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 22443572 - 22443413
Alignment:
| Q |
17 |
agaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatcttttga |
116 |
Q |
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|||| ||||||| |||||||| ||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||| | |||| ||||||| ||| |
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| T |
22443572 |
agaaaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatatcttccttgaagaacatcaatcttctga |
22443473 |
T |
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| Q |
117 |
tcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaatagc |
179 |
Q |
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| T |
22443472 |
tcttggatgtgctgctgg---tcttgacttgatcaaaactaagattcttcgtctccaaatagc |
22443413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 22358840 - 22358721
Alignment:
| Q |
15 |
caagaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatctttt |
114 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| || | |
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| T |
22358840 |
caagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcct |
22358741 |
T |
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| Q |
115 |
gatcctggatgtgctgctgg |
134 |
Q |
| |
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|||||||||||||||||||| |
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| T |
22358740 |
gatcctggatgtgctgctgg |
22358721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 22368744 - 22368574
Alignment:
| Q |
15 |
caagaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatctttt |
114 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| | |
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| T |
22368744 |
caagaaaatcaaagacatgacgaagcagctgatagaaacatcttttcacatagaagatgtcattgatgattatatcttccttgaggaacatcaatcttct |
22368645 |
T |
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| Q |
115 |
gatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaatagcttacaagat |
188 |
Q |
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|| ||||||||||||||| |||||||||||| | ||||||| | || ||||||||||| ||||| ||||| |
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| T |
22368644 |
gaacctggatgtgctgct---gctgttgacttgctcaaaactacaaaactacgtctccaaattgcttataagat |
22368574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 22636341 - 22636223
Alignment:
| Q |
15 |
caagaatatcaaagacatgatcaagcagctgattgaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatctttt |
114 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||| ||| || | |
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| T |
22636341 |
caagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacatgctcct |
22636242 |
T |
|
| Q |
115 |
gatcctggatgtgctgctg |
133 |
Q |
| |
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|||||||| |||||||||| |
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| T |
22636241 |
gatcctggttgtgctgctg |
22636223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 22437435 - 22437350
Alignment:
| Q |
49 |
gaagcatcttttcacatagaagatgtcattgctgattatatcttcctttaggaacgacaatcttttgatcctggatgtgctgctgg |
134 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||| | |||||| |||| || ||||||||||||||| ||||| |
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| T |
22437435 |
gaagcatcttttgacatagaagatgtcattgatgattatatcttccatgaggaacaacaagctcctgatcctggatgtgccgctgg |
22437350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 22370946 - 22370906
Alignment:
| Q |
54 |
atcttttcacatagaagatgtcattgctgattatatcttcc |
94 |
Q |
| |
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||||||| |||||||||||||||||| ||| |||||||||| |
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|
| T |
22370946 |
atctttttacatagaagatgtcattgatgaatatatcttcc |
22370906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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