View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_3 (Length: 646)
Name: NF7708A_low_3
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 11 - 625
Target Start/End: Original strand, 1184465 - 1185079
Alignment:
| Q |
11 |
tgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacctttctccatgaaaggagtgcaagaccggcgcagattgacgaggcagacagga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184465 |
tgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacctttctccatgaagggagtgcaagaccggcgcagattgacgaggcagacagga |
1184564 |
T |
|
| Q |
111 |
ttttatctggcggtgctatccatgatggaatccatcccaaaacagatcagaatattaatttaaagcggaaatccaatggcgttataaacgccaagataga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1184565 |
ttttatctggcggtgctatccatgatggaatccatcccaaaacagatcagaatattaatttaaagcggaaatccaatgacgttataaacgccaagataga |
1184664 |
T |
|
| Q |
211 |
atgcaatgcatcatgcaagaaatattgtggttctagttcaaaggaaaacaaatacaaagagaaacctagtacaacatctccatcgagattggctgnnnnn |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1184665 |
atgcaatgcatcatgcaagaaatattgtggttctagttcaaaggaaaacaaatacaaagagaaacctagtataacatctccatcgagattggctgaaaaa |
1184764 |
T |
|
| Q |
311 |
nngatttcacatgtgccagagggaatttttgatgcagtgaaaaagcttcaattgtcccgcaccgacatcctgaagtaagtaatgcaatcccactaactta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184765 |
aagatttcacatgtgccagagggaatttttgatgcagtgaaaaagcttcaattgtcccgcaccgacatcctgaagtaagtaatgcaatcccactaactta |
1184864 |
T |
|
| Q |
411 |
tactgtgacattttgtatcataaagctagttatatctattgcccaattacattaaggatgaaatatatttcttcttggtcaaagttttagcactaaagag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184865 |
tactgtgacattttgtatcataaagctaattatatctattgcccaattacattaaggatgaaatatatttcttcttggtcaaagttttagcactaaagag |
1184964 |
T |
|
| Q |
511 |
atacttacagttagtgtgtagcagatgggtaactgctcatggatcattctcgcaacttgagggttttttcttgcgcctgcggcttgggaagtgggaagaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184965 |
atacttacagttagtgtgtagcagatgggtaactgctcatggatcattctcgcaacttgagggttttttcttgcgcctgcggcttgggaagtgggaagaa |
1185064 |
T |
|
| Q |
611 |
gggcttggaggaact |
625 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1185065 |
gggcttggaggaact |
1185079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 16993333 - 16992867
Alignment:
| Q |
11 |
tgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacctttctccatgaaaggagtgcaagaccggcgcagattgacgaggcagacagga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
16993333 |
tgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacttttctccatgaagggagtgcaagaccggcggagattgacgaggcagacatga |
16993234 |
T |
|
| Q |
111 |
ttttatctggcggtgctatccatgatggaatccatcccaaaacagatcagaatattaatttaaagcggaaatccaatggcgttataaacgccaagataga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16993233 |
ttttatctggcggtgctatccatgatggaatccatcccaaaacagatcagaatatgaatttaaagcggaaatccaatgacgttataaacgccaagataga |
16993134 |
T |
|
| Q |
211 |
atgcaatgcatcatgcaagaaatattgtggttctagttcaaaggaaaacaaatacaaagagaaacctagtacaacatctccatcgagattggctgnnnnn |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16993133 |
atgcaatgcatcatgcaagaaatattgtggttctagttcaaaggaaaacaaatacaaagagaaacctagtataacatctccatcgagattggctgaaaaa |
16993034 |
T |
|
| Q |
311 |
nngatttcacatgtgccagagggaatttttgatgcagtgaaaaagcttcaattgtcccgcaccgacatcctgaagtaagtaatgcaatcccactaactta |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16993033 |
aagatttcacatgtgccagagggaatttttgatgcagtgaaaaagcttcaattgtcccgcaccaacatcctgaagtaagtaatgcaatcccactaactta |
16992934 |
T |
|
| Q |
411 |
tactgtgacattttgtatcataaagctagttatatctattgcccaattacattaaggatgaaatata |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16992933 |
tactgtgacattttgtatcataaagctagttatatctattgcccaattacattaaggatgaaatata |
16992867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University