View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_305 (Length: 204)
Name: NF7708A_low_305
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_305 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 16993513 - 16993310
Alignment:
| Q |
1 |
tcacaagtaaatctgttttgtttgttttgtggaaaacgaggtcaccaactcaatgattgctcggcagttgcagaaagtgagccagaagatcttcaggaga |
100 |
Q |
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| T |
16993513 |
tcacaagtaaatctgttttgtttgttttgtggaaaaagaggtcaccaactcagtgattgctcagcagttgcagaaagtgagctagaagatcttcaggaga |
16993414 |
T |
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| Q |
101 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
200 |
Q |
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| T |
16993413 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
16993314 |
T |
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| Q |
201 |
aagg |
204 |
Q |
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|||| |
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| T |
16993313 |
aagg |
16993310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1184285 - 1184488
Alignment:
| Q |
1 |
tcacaagtaaatctgttttgtttgttttgtggaaaacgaggtcaccaactcaatgattgctcggcagttgcagaaagtgagccagaagatcttcaggaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
1184285 |
tcacaagtaaatctgttttgtttgttttgtggaaaaagaggtcaccaactcagtgattgctcagcagttgcagaaagtgagctagaagatcttcaggaga |
1184384 |
T |
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| Q |
101 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
200 |
Q |
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| T |
1184385 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
1184484 |
T |
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| Q |
201 |
aagg |
204 |
Q |
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|||| |
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| T |
1184485 |
aagg |
1184488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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