View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_308 (Length: 203)
Name: NF7708A_low_308
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_308 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 27514584 - 27514410
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtgcaacctcatatttgttgatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| || ||| |
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| T |
27514584 |
tggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgt-cagcctcatatttcttcatg |
27514486 |
T |
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| Q |
116 |
atttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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| T |
27514485 |
atttaattggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 27468777 - 27468957
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatt |
107 |
Q |
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| T |
27468777 |
tggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtgctcaagtgcagcctcatatt |
27468876 |
T |
|
| Q |
108 |
tgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
188 |
Q |
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| T |
27468877 |
tcttcatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgt |
27468957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 27524223 - 27524041
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatattt |
108 |
Q |
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| T |
27524223 |
tggtgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgtgctcaagtgcaacgtcatattt |
27524124 |
T |
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| Q |
109 |
gttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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| T |
27524123 |
cttcatgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 27508565 - 27508488
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
94 |
Q |
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| T |
27508565 |
tggtgctgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 27503622 - 27503442
Alignment:
| Q |
17 |
tggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatt |
107 |
Q |
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||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||| |
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| T |
27503622 |
tggtgttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatt |
27503523 |
T |
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| Q |
108 |
tgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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| T |
27503522 |
tgttcatgatttaattagcg---tcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 27476011 - 27476187
Alignment:
| Q |
18 |
ggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatattt |
108 |
Q |
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|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||| |
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| T |
27476011 |
ggtgttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatattt |
27476110 |
T |
|
| Q |
109 |
gttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
188 |
Q |
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| T |
27476111 |
gttcatgatttaattagcg---tcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgt |
27476187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 27489723 - 27489628
Alignment:
| Q |
94 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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||||||||||||||| || ||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
130 |
cttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 27556974 - 27557021
Alignment:
| Q |
144 |
aaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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||||||||||||||||||||||||||||||||||| || |||| |||| |
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| T |
27556974 |
aaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 27517433 - 27517369
Alignment:
| Q |
27 |
taagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
91 |
Q |
| |
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||||| ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
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| T |
27517433 |
taagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 27506325 - 27506263
Alignment:
| Q |
129 |
acttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
191 |
Q |
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| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 27497875 - 27497908
Alignment:
| Q |
156 |
gacatgttttcttcattatgataatgctgatgtc |
189 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
27497875 |
gacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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