View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_310 (Length: 202)
Name: NF7708A_low_310
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_310 |
 | |
|
| [»] scaffold1361 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 42680671 - 42680816
Alignment:
| Q |
40 |
acaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggtatcgtaaccagctc |
138 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42680671 |
acaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactttgaggtatcgtaaccagctc |
42680770 |
T |
|
| Q |
139 |
tgatgccaaatatggctcaggaacaaaagaaaatgtagaaaatatt |
184 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
42680771 |
tgatgccaaatctggctcagggacaaaagaaaatgtagagaatatt |
42680816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 8733376 - 8733521
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
8733376 |
atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgctcaaactcaactccgaggtattgtaa |
8733475 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
8733476 |
ccagctctgatgccaaatctggctcagggacaaaagagaaggtaga |
8733521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 19787085 - 19786940
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19787085 |
atggccgcaaagtgaagtttcacaaaggcaactccttactcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa |
19786986 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||| ||| ||||| |
|
|
| T |
19786985 |
ccagctctgatgccaaatctagctcagggacaaaaggaaaggtaga |
19786940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 16535016 - 16535151
Alignment:
| Q |
34 |
atggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
16535016 |
atggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgtaa |
16535115 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaag |
167 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||| |
|
|
| T |
16535116 |
ccagctctgatgccaaatctggctcggggacaaaag |
16535151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 16630646 - 16630511
Alignment:
| Q |
34 |
atggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
16630646 |
atggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgtaa |
16630547 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaag |
167 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||| |
|
|
| T |
16630546 |
ccagctctgatgccaaatctggctcggggacaaaag |
16630511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 3932992 - 3932873
Alignment:
| Q |
60 |
gcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggtatcgtaacc-agctctgatgccaaatatggctca |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
3932992 |
gcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgtaaccaagctctgatgccaaatctggctca |
3932893 |
T |
|
| Q |
158 |
ggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|| ||||||| ||| ||||| |
|
|
| T |
3932892 |
gggacaaaaggaaaggtaga |
3932873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 21768950 - 21769077
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||| ||||||||||||||||||||| |||| ||| | ||||||||||||| ||||||||||| |
|
|
| T |
21768950 |
atggctacaaagtgaagttttgagaaagcaactccttgctcgcttgaaaactcactttccgtttatttcttctctcaaactcaactccaaggtatcgtaa |
21769049 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcagg |
159 |
Q |
| |
|
| ||||||| | ||||| | ||||||| |
|
|
| T |
21769050 |
cttgctctgacgtcaaattttgctcagg |
21769077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 3052455 - 3052371
Alignment:
| Q |
85 |
cactttccgttgattttt--cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag |
167 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| | || ||||||||||||||||| ||||| ||||| ||| ||||||| |
|
|
| T |
3052455 |
cactttccgttgattttttccgctcaaactcaactccaaagttacgtaaccagctctgatgtcaaatctggctgagggacaaaag |
3052371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 3933128 - 3933033
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta |
125 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| |||||| |||||| |
|
|
| T |
3933128 |
atggccgcaaagtgaagttttgagaaagcaactccttgctctcacttgaaaactcactctccgttgatttcttcgctcaaacacaactctgaggta |
3933033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 16534905 - 16534974
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16534905 |
atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
16534974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 16630757 - 16630688
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16630757 |
atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
16630688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 19787196 - 19787127
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
19787196 |
atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
19787127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 8e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 10909410 - 10909266
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggtatcgtaac |
132 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909410 |
atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggtatcgtaac |
10909311 |
T |
|
| Q |
133 |
cagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
10909310 |
cagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
10909266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 2409837 - 2409983
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
2409837 |
atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataa |
2409936 |
T |
|
| Q |
132 |
cca-gctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
| | ||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
2409937 |
ctaggctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
2409983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 734487 - 734605
Alignment:
| Q |
60 |
gcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
734487 |
gcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcag |
734586 |
T |
|
| Q |
159 |
gaacaaaagaaaatgtaga |
177 |
Q |
| |
|
| ||||||| ||| ||||| |
|
|
| T |
734587 |
ggacaaaaggaaaggtaga |
734605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 36379346 - 36379491
Alignment:
| Q |
34 |
atggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36379346 |
atggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa |
36379445 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
36379446 |
ccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
36379491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 4877295 - 4877150
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
4877295 |
atggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaactccgtggtatcgtaa |
4877196 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
4877195 |
ccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
4877150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 4877403 - 4877317
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaact |
117 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4877403 |
atggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact |
4877317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 7939044 - 7939104
Alignment:
| Q |
41 |
caaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||||| |||| |||| | ||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
7939044 |
caaagtgatgtttcacaaggacaactccttactcactggaaaactcactttccgtttattt |
7939104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 31487188 - 31487043
Alignment:
| Q |
34 |
atggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31487188 |
atggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa |
31487089 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
31487088 |
ccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
31487043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 42277663 - 42277808
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42277663 |
atggccgcaaagtgaagttttactaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa |
42277762 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
42277763 |
ccagctctgatatcaaatctggctcagggacaaaaggaaaggtaga |
42277808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 37208189 - 37208054
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37208189 |
atggccgcaaagtgaagttttacaaaggcaactccttgcgcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa |
37208090 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaag |
167 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37208089 |
ccagctctgatgccaaatctggctcagggacaaaag |
37208054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 11852056 - 11852201
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
11852056 |
atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgtaaactcactttccgtttattttttcgctcaaactcaactccgaggtatcataa |
11852155 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
11852156 |
ccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
11852201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 15469373 - 15469229
Alignment:
| Q |
38 |
ccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccag |
135 |
Q |
| |
|
|||||||||||||||| | || |||||| ||| |||||||||||| | || || |||||||| ||| | |||||||||||| |||||||| ||||| | |
|
|
| T |
15469373 |
ccacaaagtgaagttttgagaaagcaacttcttactcacttgaaaattgaccttttgttgatttcttctctcaaactcaactctgaggtatcataacctg |
15469274 |
T |
|
| Q |
136 |
ctctgatgccaaatatggctcaggaacaaaagaaaatgtagaaaa |
180 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||| ||| ||| |||| |
|
|
| T |
15469273 |
ctctgatgccaattctggctcagggacaaaaggaaaggtaaaaaa |
15469229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 11851985 - 11852014
Alignment:
| Q |
71 |
ctcacttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11851985 |
ctcacttgaaaactcactttccgttgattt |
11852014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1361 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold1361
Description:
Target: scaffold1361; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 259 - 114
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
259 |
atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcacttttcgttgattttttcgcacaaactcaactccgaggtatcgtaa |
160 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
159 |
ccagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 13774456 - 13774310
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtatcgta |
130 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||| |
|
|
| T |
13774456 |
atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtatcgta |
13774357 |
T |
|
| Q |
131 |
accagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
13774356 |
accagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
13774310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 45162484 - 45162338
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||| |
|
|
| T |
45162484 |
atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataa |
45162385 |
T |
|
| Q |
132 |
cca-gctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
| | ||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
45162384 |
ctaggctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
45162338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 42470649 - 42470794
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
42470649 |
atggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaactccgtggtatcgtaa |
42470748 |
T |
|
| Q |
132 |
ccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
42470749 |
ccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
42470794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 24907984 - 24908099
Alignment:
| Q |
60 |
gcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
158 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||| ||||| | |
|
|
| T |
24907984 |
gcaactccttgctcacttaaaaactcactttctgttgatttcttcgctcaaactcaactctgaggtatcgtaacctgctctaataccaaatttggcttaa |
24908083 |
T |
|
| Q |
159 |
gaacaaaagaaaatgt |
174 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
24908084 |
ggacaaaaggaaatgt |
24908099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 42470541 - 42470627
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact |
117 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
42470541 |
atggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact |
42470627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 13774597 - 13774528
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
13774597 |
atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
13774528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 4531140 - 4530994
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtatcgta |
130 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||| |
|
|
| T |
4531140 |
atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtatcgta |
4531041 |
T |
|
| Q |
131 |
accagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
4531040 |
accagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
4530994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 18966032 - 18966125
Alignment:
| Q |
34 |
atggccacaaagtgaagtttacaa-aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta |
125 |
Q |
| |
|
|||||| ||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
18966032 |
atggccgcaaagtgaagttttccataggcaactccatgctcacttgaaaactcactttccgttgattttttcgctataactcaactccgaggta |
18966125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 1701453 - 1701344
Alignment:
| Q |
60 |
gcaactccttgctcacttgaaaactcac-tttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctca |
157 |
Q |
| |
|
||||||||||| ||||||||||||| || ||| ||||||||| ||||| |||||| ||||| |||||||| ||| ||||||||| ||||| ||| ||| |
|
|
| T |
1701453 |
gcaactccttgttcacttgaaaacttactttttcgttgatttcttcgctcaaactgaactctgaggtatcttaatatgctctgatgtcaaatctggttca |
1701354 |
T |
|
| Q |
158 |
ggaacaaaag |
167 |
Q |
| |
|
|| ||||||| |
|
|
| T |
1701353 |
gggacaaaag |
1701344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 18966157 - 18966206
Alignment:
| Q |
98 |
tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18966157 |
tttttcgctcaaactcaactccgaggtatcgtaaccagttctgctgccaa |
18966206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 4531281 - 4531212
Alignment:
| Q |
34 |
atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
100 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4531281 |
atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
4531212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 88651 - 88505
Alignment:
| Q |
34 |
atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggtatcgtaa |
131 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
88651 |
atggccgcaaagtgaagttttacaaaggaaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaa |
88552 |
T |
|
| Q |
132 |
cca-gctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
||| ||||| || |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
88551 |
ccaggctctaataccaaatctggctcagggacaaaaggaaaggtaga |
88505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 29625 - 29488
Alignment:
| Q |
42 |
aaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaactccgaggtatcgtaaccagctct |
139 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
29625 |
aaagtgaagttttacaaaggcaagtccttgctcacttgaaaacccactttccgttgatttttttgctcaaactcaacgccgaggtatcgtaaccagctct |
29526 |
T |
|
| Q |
140 |
gatgccaaatatggctcaggaacaaaagaaaatgtaga |
177 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
29525 |
gatgccaaatctggctcagggacaaaaggaaaggtaga |
29488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 20642453 - 20642346
Alignment:
| Q |
60 |
gcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| || || ||| | | |||||| |
|
|
| T |
20642453 |
gcaactccttgctcacttgaaaactcactttccgttgattttttcgctaaaactcgactccgaggtatcgtaaccagctttggtgtcaattcttgctcag |
20642354 |
T |
|
| Q |
159 |
gaacaaaa |
166 |
Q |
| |
|
| |||||| |
|
|
| T |
20642353 |
ggacaaaa |
20642346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 64204 - 64134
Alignment:
| Q |
89 |
ttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
158 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||| ||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
64204 |
ttccgttgatttcttcgctcaaactcaactctgaggtagcgtaacctgctttgatgtcaaatttggatcag |
64134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 71536 - 71466
Alignment:
| Q |
89 |
ttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
158 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||| ||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
71536 |
ttccgttgatttcttcgctcaaactcaactctgaggtagcgtaacctgctttgatgtcaaatttggatcag |
71466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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