View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_311 (Length: 202)
Name: NF7708A_low_311
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_311 |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 3901850 - 3902038
Alignment:
| Q |
14 |
ttctaaatcaataattatgtatcatctaaaaatttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaa |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3901850 |
ttctaaatcaataattatgcatcatctaaaaatttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaa |
3901949 |
T |
|
| Q |
114 |
aagctatggcaccgaagtgaaatcagaatatttttacacattatattgtcgttttcactaatccaaacaatataccggacactacttgt |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3901950 |
aagctatggcaccgaagtgaaatccgaatatttttacacattatattgtcgttttcactaatccaaacaatataccggacactacttgt |
3902038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 52198372 - 52198436
Alignment:
| Q |
22 |
caataattatgtatcatctaaa-aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
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|||||||||| | ||||| ||| ||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
52198372 |
caataattatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaa |
52198436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 44015466 - 44015363
Alignment:
| Q |
35 |
tcatctaaa-aatttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaaaagctatggcaccgaagtga |
133 |
Q |
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||||||||| ||||||||||||||||| ||| || ||| | ||||||||||| | |||| |||| || ||||| ||| |||||||||| ||| |||||| |
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| T |
44015466 |
tcatctaaataatttattttaatcattcatctatcattctttctcatctaaaatacactaatgtcaccaatgttaccaaaaagctatgtcactcaagtga |
44015367 |
T |
|
| Q |
134 |
aatc |
137 |
Q |
| |
|
|||| |
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|
| T |
44015366 |
aatc |
44015363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 50041858 - 50041817
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
50041858 |
aatttattttaatcattcatctatcattatctctcatctaaa |
50041817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 50049080 - 50049039
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||| |
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|
| T |
50049080 |
aatttattttaatcattcatctatcattatctctcatctaaa |
50049039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 38529934 - 38529885
Alignment:
| Q |
35 |
tcatctaaa-aatttattttaatcatttatcaattattatctctcatcta |
83 |
Q |
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||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
38529934 |
tcatctaaataatttattttaatcattcataaattattatctctcatcta |
38529885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 48915029 - 48914942
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaaaagctatggcaccgaagt |
131 |
Q |
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||||||||||||||||| || || ||| ||||||||||||| || ||| |||| || |||||||| |||| |||||||||| |||| |
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| T |
48915029 |
aatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtcaccaatgtcacaaaaaaactatggcacccaagt |
48914942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 48915420 - 48915333
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaaaagctatggcaccgaagt |
131 |
Q |
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|
||||||||||||||||| || || ||| ||||||||||||| || ||| |||| || |||||||| |||| |||||||||| |||| |
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| T |
48915420 |
aatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtcaccaatgtcacaaaaaaactatggcacccaagt |
48915333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 20896241 - 20896183
Alignment:
| Q |
35 |
tcatctaaa-aatttattttaatcatttatcaattattatctctcatctaaattgcact |
92 |
Q |
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|
||||||||| ||||||||||||||||| || || ||||||||||||||||| |||||| |
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| T |
20896241 |
tcatctaaataatttattttaatcattcatatatcattatctctcatctaaaatgcact |
20896183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 44132917 - 44132876
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
44132917 |
aatttattttaatcattcatctatcattatctctcatctaaa |
44132876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 2628478 - 2628400
Alignment:
| Q |
46 |
tttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaaaagctatggca |
124 |
Q |
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|||||||||||||||||| || ||| ||||||||||||| || ||| |||| || |||| |||| |||| |||||||| |
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| T |
2628478 |
tttattttaatcatttattcatcattctctctcatctaaaatgaacttatgtcaccaatggcaccaaaaaactatggca |
2628400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 24833120 - 24833186
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacc |
110 |
Q |
| |
|
||||||||||||||| ||||| | |||| ||| ||||||||| |||||| || | |||||||||||| |
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|
| T |
24833120 |
aatttattttaatcagttatccactattctctttcatctaaaatgcactaatttgactaatgtcacc |
24833186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 32204761 - 32204830
Alignment:
| Q |
17 |
taaatcaataattatgtatcatctaaa-aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
| |
|
||||||||| ||||| | |||| |||| ||||||||||||||||||||| || || ||||||||||||| |
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| T |
32204761 |
taaatcaatcattatctctcatataaataatttattttaatcatttatctatcatcttctctcatctaaa |
32204830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 8585750 - 8585839
Alignment:
| Q |
45 |
atttattttaatcatttatcaattattatctctcatctaaattgcactgatgttactaatgtcacctaaaagctatggcaccgaagtgaaa |
135 |
Q |
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|||||||||||||||| ||| || ||| ||| ||||||||| | |||| |||| |||||||||| | |||| ||||| |||| |||||||| |
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| T |
8585750 |
atttattttaatcattcatccatcattctctttcatctaaaatacactaatgtcactaatgtcatc-aaaaactatgtcacccaagtgaaa |
8585839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31606 - 31659
Alignment:
| Q |
33 |
tatcatctaaa-aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||| |||||| |||||| |
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|
| T |
31606 |
tatcatctaaataatttattttaatcattcatctattattctctctcgtctaaa |
31659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 14151986 - 14151945
Alignment:
| Q |
44 |
aatttattttaatcatttatcaattattatctctcatctaaa |
85 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
14151986 |
aatttattttaatcattcattcattattatctctcatctaaa |
14151945 |
T |
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