View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_34 (Length: 399)
Name: NF7708A_low_34
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 22 - 394
Target Start/End: Original strand, 37915145 - 37915517
Alignment:
| Q |
22 |
gttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915145 |
gttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctc |
37915244 |
T |
|
| Q |
122 |
cgcctcttgatcttccttcccatgaaagagatagcgtacttaaacacccaacggctcctaaactcaactactttcaagaaatacaatattttgtattgga |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915245 |
cgcctcttgatcttccttcccatgaaagagatagagtacttaaacacccaacggctcctaaactcaactactttcaagaaatacaatattttgtattgga |
37915344 |
T |
|
| Q |
222 |
aatcatgaaatccacaagtctagttcgagatgcagcttatgctaacaaagtacgaactagtttagtattgagtcgtgaagaagttcagaaaatgaaggga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915345 |
aatcatgaaatccacaagtctagttcgagatgcagcttatgctaacaaagtacgaactagtttagtattgagtcgtgaagaagttcagaaaatgaaggga |
37915444 |
T |
|
| Q |
322 |
tggatcattgataaatgtaaagactcaacaccacacatgtcaacttttgttgtaacatgttccttgatttggt |
394 |
Q |
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| T |
37915445 |
tggatcattgataaatgtaaagactcaacaccacacatgtcaacttttgttgtaacatgttccttgatttggt |
37915517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 126 - 394
Target Start/End: Original strand, 37907076 - 37907349
Alignment:
| Q |
126 |
tcttgatcttccttcccatgaaagagatagcgtacttaaacacccaacggctcctaaactcaactactttcaagaaatacaatattttgtattggaaatc |
225 |
Q |
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|||||||||||||||||||||||| |||| |||||||| | |||| ||||||||||||| |||||| |||||||||||| ||| |||||| ||| | |
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| T |
37907076 |
tcttgatcttccttcccatgaaaggcatagattacttaaagatccaaaggctcctaaactcgcctacttgcaagaaatacaagattatgtattaaaaaac |
37907175 |
T |
|
| Q |
226 |
atgaaatccacaagtctagttcgagatgcagcttatgctaacaaagtacgaactagtttagtattgagtcgtgaagaagttcagaaaatgaagggatgga |
325 |
Q |
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||| ||| ||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
37907176 |
atggaattcacaagtctcgttcgagatggagcttacgctaacaaggtacgaactagtttagtattgagtcgtgaagaagttcagaaactaaagaaatggg |
37907275 |
T |
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| Q |
326 |
tcattgataaatgtaaag-----actcaacaccacacatgtcaacttttgttgtaacatgttccttgatttggt |
394 |
Q |
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| T |
37907276 |
ttgttgataaaagtaaagaaattaaacaacgccgcacatgtcaacatttgttgtaacatgttccttgatttggt |
37907349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 37961086 - 37960950
Alignment:
| Q |
22 |
gttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgag---ttgtctcttgaatact |
118 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| ||||||||||||| | | |||| ||||| ||| |||| |||||| | |||||||||||||||| |
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| T |
37961086 |
gttgctgcagacggaaaatcacttcaccatttcgtgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctcttgaatact |
37960987 |
T |
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| Q |
119 |
ctccgcctcttgatcttccttcccatgaaagagatag |
155 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
37960986 |
ctccgcctcttgatcttccttcacatgaaagagatag |
37960950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 37960751 - 37960711
Alignment:
| Q |
354 |
acacatgtcaacttttgttgtaacatgttccttgatttggt |
394 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| |
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| T |
37960751 |
acacttgtcaacttttgttgtaacaagttccttgatttggt |
37960711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 37906982 - 37907030
Alignment:
| Q |
22 |
gttgttgcagacggaaaatc--acttcatcatttcatgaaattttgggc |
68 |
Q |
| |
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|||| |||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
37906982 |
gttgctgcatacggaaaatcgtacttcatcatttcatgaaattttgggc |
37907030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 3783597 - 3783632
Alignment:
| Q |
359 |
tgtcaacttttgttgtaacatgttccttgatttggt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3783597 |
tgtcaacttttgttgtaacatgttccttgatttggt |
3783632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 3783266 - 3783390
Alignment:
| Q |
34 |
ggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga-- |
131 |
Q |
| |
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|||||||||||||| || ||||||||| | ||| ||| |||||||||| | | ||| | ||||||| || ||||| ||| |||||| ||||||||| |
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| T |
3783266 |
ggaaaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatc |
3783365 |
T |
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| Q |
132 |
-tcttccttcccatgaaagagatag |
155 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
3783366 |
ttcttccttcacatgaaagagatag |
3783390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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