View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_37 (Length: 395)
Name: NF7708A_low_37
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 12548671 - 12549043
Alignment:
| Q |
17 |
gtgttagtgtgtcattggatgaatttgtgatgtgtatttaattaatgccttgaagaaatataactaacatttctcagcttattgtttgttttattagtgt |
116 |
Q |
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| T |
12548671 |
gtgttagtgtttcattggatgaatttatgatgtgtatttaattaatgccttgaagaaatataactaacatttctcagcttattgtttgttttattagtgt |
12548770 |
T |
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| Q |
117 |
gcagcatgagtaaggatccggttcgtgaatggattctctctgaaggaaaagcttcaaagataaccaaaattagtccagttggaggtggttgtatcaattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12548771 |
gcagcatgagtaaggatccggttcgtgaatggattctctctgaaggaaaagcttcaaagataaccaaaattagtccagttggaggtggttgtatcaattt |
12548870 |
T |
|
| Q |
217 |
tgcgaatcgctacgacactgatgctggttcattctttgttaaaacaaacaggtagtatgaactatgaaacatacattctgctgtttttctttctatggaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12548871 |
tgcgaatcgctacgacactgatgctggttcattctttgttaaaacaaacaggtagtatgaactatgaaacatacattctgctgtttttctttctatggaa |
12548970 |
T |
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| Q |
317 |
tgagctatctgttggttatttggatttgttggattatgtttctgaaagttgaaactttatatcaggagtattg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12548971 |
tgagctatctgttggttatttggatttgttggattatgtttctgaaagttgaaactttatatcaggagtattg |
12549043 |
T |
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