View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_4 (Length: 577)
Name: NF7708A_low_4
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_4 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 218 - 564
Target Start/End: Original strand, 13270 - 13634
Alignment:
| Q |
218 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatgataataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
13270 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatattaaaaaatttaactatgtaaagaatgataataa |
13369 |
T |
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| Q |
318 |
agaaaagaatagatccaacaaacaaaaatatt------------------tgagaaacgcggtctctgctctctccatctcttcgtcttcgccatctcct |
399 |
Q |
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||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
13370 |
agaaaagaatagatccaacaaacgaaaaaattgatattttgtctcctatctgagaaacgcggtctctgctctctccatctctctgtctttgccatctcct |
13469 |
T |
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| Q |
400 |
cccaaacttcgatctttgaccgccatctcctcctagtctccgatctccgaccgccatctcttcccagtctccgacggccgcattctctcaaacggtctct |
499 |
Q |
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||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
13470 |
cccaatctccggtctttgaccgccatctcctcatagtctccgatctccgaccgccatctcttcccagtctccgacggctgcattctctctaacggtctct |
13569 |
T |
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| Q |
500 |
tctccttctgcaattcaacattgactattgtctccgtcgccgaatcaaaccgttgaaggtgatgt |
564 |
Q |
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| T |
13570 |
tctccttctgcgattcaacatcgactgctgtctccgtcgccgaatcaaaccgttgaaggtgatgt |
13634 |
T |
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Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 42212019 - 42211920
Alignment:
| Q |
116 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
215 |
Q |
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| T |
42212019 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
42211920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 47345551 - 47345444
Alignment:
| Q |
225 |
ttcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatgataataaagaaaag |
324 |
Q |
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|||||||| ||||||||||||||||||||| || ||| |||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
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| T |
47345551 |
ttcatgtattactcttttggtacacccttttatagcactgatgacatgacatggaaatattaaacaatttaactttgtaaagaatgataaaaaagaaaag |
47345452 |
T |
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| Q |
325 |
aatagatc |
332 |
Q |
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| T |
47345451 |
aatagatc |
47345444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 47345407 - 47345357
Alignment:
| Q |
354 |
aaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaa |
404 |
Q |
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| T |
47345407 |
aaacgcgatctctgctctctccatctctctgtcatcgccatctcctcccaa |
47345357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 47345372 - 47345319
Alignment:
| Q |
451 |
cgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctcc |
504 |
Q |
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| T |
47345372 |
cgccatctcctcccaatctccgaccgccgcattctctctaacgatctcttctcc |
47345319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 3798071 - 3798110
Alignment:
| Q |
293 |
ttaactttgtaaataatgataataaagaaaagaatagatc |
332 |
Q |
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| T |
3798071 |
ttaactttgtaaagaatgataaaaaagaaaagaatagatc |
3798110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 3798187 - 3798236
Alignment:
| Q |
453 |
ccatctcttcccagtctccgacggccgcattctctcaaacggtctcttct |
502 |
Q |
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| T |
3798187 |
ccatctcctctcagtctccgaccgccgcattctctctaacgatctcttct |
3798236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 34165028 - 34164988
Alignment:
| Q |
420 |
cgccatctcctcctagtctccgatctccgaccgccatctctt |
461 |
Q |
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| T |
34165028 |
cgccatctcctcc-agtctccgatctccgaccgtcatctctt |
34164988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 39034016 - 39033975
Alignment:
| Q |
420 |
cgccatctcctcctagtctccgatctccgaccgccatctctt |
461 |
Q |
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| T |
39034016 |
cgccatctcctcccagtctccgatctccgaccgccatctctt |
39033975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 428
Target Start/End: Complemental strand, 39034043 - 39033977
Alignment:
| Q |
362 |
tctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctc |
428 |
Q |
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| T |
39034043 |
tctcttctctctccatctctctgtcgtcgccatctcctcccagtctccgatctccgaccgccatctc |
39033977 |
T |
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