View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_40 (Length: 387)
Name: NF7708A_low_40
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 61 - 381
Target Start/End: Complemental strand, 31859928 - 31859608
Alignment:
| Q |
61 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcctgcactgcatggcaacatgagtagattaattacatc |
160 |
Q |
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| T |
31859928 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
31859829 |
T |
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| Q |
161 |
taggtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacctcaact |
260 |
Q |
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| T |
31859828 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaact |
31859729 |
T |
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| Q |
261 |
caaagcaacgactttgatgctcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtctttgttg |
360 |
Q |
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| T |
31859728 |
cataacaacgactttgatactcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtcattgttg |
31859629 |
T |
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| Q |
361 |
ttgatatgaatctactagact |
381 |
Q |
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| T |
31859628 |
tggatattgatctactagact |
31859608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 8869428 - 8869545
Alignment:
| Q |
110 |
aatgcaggtacttcctgcactgcatggcaacatgagtagattaattacatctaggtggttacagaaaaacggcgtgctcactatggaagcatctgaatgg |
209 |
Q |
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| T |
8869428 |
aatgcaggtattgcttgcactacaaggaaacatgggtagaataataacatcaaagtggttaaccaaaaaaggggtgtgcacaatggaagcatctgaatgg |
8869527 |
T |
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| Q |
210 |
aatggattaacacaaatt |
227 |
Q |
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| T |
8869528 |
aatggactaacacaaatt |
8869545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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