View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_46 (Length: 372)
Name: NF7708A_low_46
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 45481372 - 45481657
Alignment:
| Q |
1 |
cttaggatggttcaacttcttacagcaacgttggctcatgcatgtgattgggagttggagaatggtgtaagtccagaaaagcttaatagggatgaagcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45481372 |
cttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtccagaaaagcttaatatggatgaagcat |
45481471 |
T |
|
| Q |
101 |
atgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcaccacatttgtacttgtaatcatcatcttttcgagtttggct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45481472 |
atgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcacctcatttgtacttgtaatcatcatcttttcgagtttggct |
45481571 |
T |
|
| Q |
201 |
taatgccccttgtcttcatccaatcatcattctattattaaaattgtggatactctcaactttttaataaagcaagaaaagtttac |
286 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45481572 |
taatgccccttgccttcatccaatcatcgttctattattaaaattgtggatactctcaactttttaataaagcaagaaaagtttac |
45481657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 45481653 - 45481701
Alignment:
| Q |
324 |
tttacattacattcaagtttgcttgtaaactatgaatgggccatagagg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45481653 |
tttacattacattcaagtttgcttgtaaactattaatgggccatagagg |
45481701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University