View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_50 (Length: 364)
Name: NF7708A_low_50
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 45358726 - 45358390
Alignment:
| Q |
8 |
cagttctctgtccccgagtcacctgatgtaggaatcacaactattttaacattagatctacatgcaacaataccttgtgcgcaaaatcatttaatctccg |
107 |
Q |
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| T |
45358726 |
cagttctctgtccccgagtcacctgatgcaggaatcacaactatttcagcatcagatctacatgcaacaataccttgtgcgcaaaatcatttgatctccg |
45358627 |
T |
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| Q |
108 |
taattcctacagaaactttactcttccatttgatctccgtaattcctacatacaactacacctggtttcattgtgtgaaaaagacaatgtaacgcctctc |
207 |
Q |
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| T |
45358626 |
taattcctacagaaactttactcttccatttgatctccgtaattcctacatacaactacacctggtgtcattgtgtgaaacagacaatgtaacacctctc |
45358527 |
T |
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| Q |
208 |
tttcacacaattacacacgtgcactgccctcctcaacaacatttagcaacatgttccacattagattctttcataaaaagcaatccaatgtcgaacatgt |
307 |
Q |
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| T |
45358526 |
tttcacacaattacacacgtgcactgccct---------catttggcaacctgttccacattagattctttcataaaaatcaatccaatgccgaacatgt |
45358436 |
T |
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| Q |
308 |
tgtcaaatgttgttgaagaaattagccgattctgaagcaccacaac |
353 |
Q |
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| T |
45358435 |
tgtcaaatgttgttgaagaaattagccgattctgaagcaccacaac |
45358390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 27085274 - 27085234
Alignment:
| Q |
288 |
caatccaatgtcgaacatgttgtcaaatgttgttgaagaaa |
328 |
Q |
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| T |
27085274 |
caatctaatgtcgaacatgctgtcaaatgttgctgaagaaa |
27085234 |
T |
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