View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_56 (Length: 357)
Name: NF7708A_low_56
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 29486455 - 29486634
Alignment:
| Q |
5 |
cacgtccaagttccataaatgagaaggaagaaaataaataaaactttgtcctcccaaacatttgtggacacacactatgcacatgatagaggaaattttc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29486455 |
cacgtccaagttccataaatgagaaggaagaaaataaataaaactttgtcctcccaaccatttgtggacacacactatgcacatgatagaggagattttc |
29486554 |
T |
|
| Q |
105 |
attttcatattaaatttttgcacctaaaaagtgtaaggttcaaaagaaaaagacatattgttcaatataaaaatgaaagtgaggtc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29486555 |
attttcatattaaatttttgcacctaaaaagtgtaaggttc------aaaagacatattgttcaatataaaaatgaaagtgaggtc |
29486634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 29486663 - 29486832
Alignment:
| Q |
179 |
gaaagtgaggtctctagtcttttttaaaaatggatattaattatttggcatgcaattatttttaagtaactatagggccaagacattgactctacctaag |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29486663 |
gaaagtgaggtctctagtctttt-taaaaatggatattaattatttggcatgcaattatttttaagtaactataggggcaagacattgactctacctaag |
29486761 |
T |
|
| Q |
279 |
tctttcaaatgtatagttagcctctttacaccattcgtggtccccatggatttacctttcgttttcatctc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29486762 |
tctttcaaatgtatagttagcctctttacaccattcgtggtccccatagatttacctttcgttttcatctc |
29486832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University