View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_6 (Length: 554)
Name: NF7708A_low_6
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 20 - 554
Target Start/End: Complemental strand, 42445570 - 42445036
Alignment:
| Q |
20 |
ctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcctgcatatgctaagggcaacagtgttgga |
119 |
Q |
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| T |
42445570 |
ctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcctgcatatgctaagggcaacagtgttgga |
42445471 |
T |
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| Q |
120 |
gaggaatcggaaggctggaaaacagagtcgccctcaaatccttccccatttccaagcactgctgttgccacaatggttctgtcaatagtgcttgctccaa |
219 |
Q |
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||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445470 |
gagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccacaatggttctgtcaatagtgcttgctccaa |
42445371 |
T |
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| Q |
220 |
ctgtgagcatccatggggctccattaaccaaggaggcatcagaaggaccaaagtttcctgctgcaatacttacaaagattcccttctgaattgctgcaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445370 |
ctgtgagcatccatggggctccattaaccaaggaggcatcagaaggaccaaagtttcctgctgcaatacttacaaagattcccttctgaattgctgcaaa |
42445271 |
T |
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| Q |
320 |
agcgcctatggcagtgctatcattgaaaaatggaggaggctcacttagaccaagtgatatcgatattacatccacaccatcctccacagctgcatctaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445270 |
agcgcctatggcagtgctatcattgaaaaatggaggaggctcacttagaccaagtgatatcgatattacatccacaccatcctccacagctgcatctaat |
42445171 |
T |
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| Q |
420 |
gccgcaagtatattactctcggcacagtcttctccaaagcacactttgtaaattgctaggtgagcatgaggagccatccctgctgccgtacctttagcat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445170 |
gccgcaagtatattactctcggcacagtcttctccaaagcacactttgtaaattgctaggtgagcatgaggagccatccctgctgccgtacctttagcat |
42445071 |
T |
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| Q |
520 |
ttcctagcacttctgcattgtcgacaaaagcacca |
554 |
Q |
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| T |
42445070 |
ttcctagcacttctgcattttcgacaaaagcacca |
42445036 |
T |
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