View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_60 (Length: 352)
Name: NF7708A_low_60
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 40821849 - 40821517
Alignment:
| Q |
14 |
aaaagaaaagaaaagttataatctaaataagtagggaaatgactcaaactacgttaagtttttataatgatagagattttaagaaccatgatttacttgt |
113 |
Q |
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|||||||||||||||| |||| |||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||||| |
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| T |
40821849 |
aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgt |
40821750 |
T |
|
| Q |
114 |
gattttttagactcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821749 |
gattttttagactcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg |
40821650 |
T |
|
| Q |
214 |
tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgtgttgctatttgttacaagttagtattgccaaaaccaacatcacatcatcccaat |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
40821649 |
tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagt |
40821550 |
T |
|
| Q |
314 |
acataaaggacaccgaaactcttatctccaaag |
346 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |
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| T |
40821549 |
acataaaggacactgaaactcttatctccaaag |
40821517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 40826306 - 40826201
Alignment:
| Q |
241 |
tctgttctgttcattttgtgttgctatttgttacaagttagtattgccaaaaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct |
340 |
Q |
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|||||| |||| ||| |||||||||||| ||||| |||||||||| | | || |||||||||||| |||| ||| |||||| | |||||||| ||| |
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| T |
40826306 |
tctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctgaaactctactct |
40826207 |
T |
|
| Q |
341 |
ccaaag |
346 |
Q |
| |
|
|||||| |
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| T |
40826206 |
ccaaag |
40826201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 89 - 346
Target Start/End: Original strand, 20292060 - 20292311
Alignment:
| Q |
89 |
attttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaatctcaaatcatcattaataagaaagagtggttgtttttgtatc |
185 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
20292060 |
atttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaatctcaaatcattattaataagaaagagtggtt-tttttgtatc |
20292158 |
T |
|
| Q |
186 |
atagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctctgttctgttcattttgtgttgctatttgttacaagttagtatt |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
20292159 |
atagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttaatatt |
20292250 |
T |
|
| Q |
286 |
gccaaaaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag |
346 |
Q |
| |
|
|||| || || ||||||||||||||||| ||| |||||| | ||||||||||||||||||| |
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|
| T |
20292251 |
gccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctccaaag |
20292311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 20229247 - 20229352
Alignment:
| Q |
241 |
tctgttctgttcattttgtgttgctatttgttacaagttagtattgccaaaaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct |
340 |
Q |
| |
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|||||| | ||||||||||||||||||||| |||| |||||| ||| | | || |||||||||||| |||| || || ||| | |||||||| |||| |
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| T |
20229247 |
tctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct |
20229346 |
T |
|
| Q |
341 |
ccaaag |
346 |
Q |
| |
|
|||||| |
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|
| T |
20229347 |
ccaaag |
20229352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 20261830 - 20261935
Alignment:
| Q |
241 |
tctgttctgttcattttgtgttgctatttgttacaagttagtattgccaaaaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct |
340 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||| |||||| ||| | | || |||||||||||| |||| || || ||| | |||||||| |||| |
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| T |
20261830 |
tctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct |
20261929 |
T |
|
| Q |
341 |
ccaaag |
346 |
Q |
| |
|
|||||| |
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|
| T |
20261930 |
ccaaag |
20261935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
158 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | | | | ||||||| ||||| ||||||||| |||||||||| |
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|
| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 20170527 - 20170431
Alignment:
| Q |
250 |
ttcattttgtgttgctatttgttacaagttagtattgccaaaaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag |
346 |
Q |
| |
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||||||||||||||||||||| |||| |||||| ||| | | || |||||||||||| |||| || || ||| | |||||||| |||||||||| |
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| T |
20170527 |
ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag |
20170431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 20172520 - 20172424
Alignment:
| Q |
250 |
ttcattttgtgttgctatttgttacaagttagtattgccaaaaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag |
346 |
Q |
| |
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||||||||||||||||||||| |||| |||||| ||| | | || |||||||||||| |||| || || ||| | |||||||| |||||||||| |
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| T |
20172520 |
ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag |
20172424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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