View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_61 (Length: 351)
Name: NF7708A_low_61
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 37179999 - 37180316
Alignment:
| Q |
20 |
gaagtgactgctggcaaggggggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
119 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37179999 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
37180098 |
T |
|
| Q |
120 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaagggggtaatgttgttggttttggtaaagtgggaatggttggtaa |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180099 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggttggtaa |
37180198 |
T |
|
| Q |
220 |
atttggttgt---gttgtttgcaaaagatgacgagcctctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatatt |
316 |
Q |
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|||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180199 |
atttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatatt |
37180298 |
T |
|
| Q |
317 |
gccattgatagtttgatg |
334 |
Q |
| |
|
|||||||||||||||||| |
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| T |
37180299 |
gccattgatagtttgatg |
37180316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 37189855 - 37189538
Alignment:
| Q |
20 |
gaagtgactgctggcaaggggggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
119 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189855 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
37189756 |
T |
|
| Q |
120 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaagggggtaatgttgttggttttggtaaagtgggaatggttggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189755 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggttggtaa |
37189656 |
T |
|
| Q |
220 |
atttggttgt---gttgtttgcaaaagatgacgagcctctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatatt |
316 |
Q |
| |
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|||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37189655 |
atttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaaggatttgaatatt |
37189556 |
T |
|
| Q |
317 |
gccattgatagtttgatg |
334 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37189555 |
gccattgatagtttgatg |
37189538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 37181738 - 37181445
Alignment:
| Q |
20 |
gaagtgactgctggcaaggggggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181738 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
37181639 |
T |
|
| Q |
120 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaagggggtaatgttgttggttttggtaaagtgggaatggttggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
37181638 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggctggtaa |
37181539 |
T |
|
| Q |
220 |
atttggttgt---gttgtttgcaaaagatgacgagcctctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttg |
310 |
Q |
| |
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|||||||||| || |||||||||||||| ||||| |||||||||||| |||| ||||| ||||| ||||||||||||| |||||||||||| |
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| T |
37181538 |
atttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttg |
37181445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 37187682 - 37187988
Alignment:
| Q |
20 |
gaagtgactgctggcaaggggggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
119 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
37187682 |
gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag |
37187781 |
T |
|
| Q |
120 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaagggggtaatgttgttggttttggtaaagtgggaatggttggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| |||||||| | || || |
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|
| T |
37187782 |
ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaaggcaaaggtggtaatgtagttggatttggtaaattgggaatgttaggcaa |
37187881 |
T |
|
| Q |
220 |
atttggttgtgttgtttgcaaaagatgacgagcctctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgcc |
319 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| |||||||||||| |||| || |||||||| |||||||||| | |||||||||||||| | |||| |
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| T |
37187882 |
atttggttgtgttgtctgtaaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatgcc |
37187981 |
T |
|
| Q |
320 |
attgata |
326 |
Q |
| |
|
||||||| |
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| T |
37187982 |
attgata |
37187988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
| Q |
123 |
tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38704220 |
tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg |
38704268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 38704284 - 38704369
Alignment:
| Q |
229 |
tgttgtttgcaaaagatgacgagcctctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||| ||||||||||| ||||||| |||||||||| ||||||||| |
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|
| T |
38704284 |
tgttgtttgcaaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg |
38704369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 27096810 - 27096701
Alignment:
| Q |
41 |
ggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaa |
140 |
Q |
| |
|
|||| |||||||||||||| ||||||| || ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27096810 |
ggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaa |
27096714 |
T |
|
| Q |
141 |
gatttccttgagg |
153 |
Q |
| |
|
||| |||||||| |
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|
| T |
27096713 |
cattaccttgagg |
27096701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 27103113 - 27103004
Alignment:
| Q |
41 |
ggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaa |
140 |
Q |
| |
|
|||| |||||||||||||| ||||||| || || |||| || |||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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|
| T |
27103113 |
ggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatggaggaa |
27103017 |
T |
|
| Q |
141 |
gatttccttgagg |
153 |
Q |
| |
|
||| |||||||| |
|
|
| T |
27103016 |
cattaccttgagg |
27103004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 27102898 - 27102812
Alignment:
| Q |
187 |
tgttggttttggtaaagtgggaatggttggtaaatttggttgt---gttgtttgcaaaagatgacgagcctctaggctcatgtttga |
270 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||| | ||||| |||||| |||||||||| |
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|
| T |
27102898 |
tgttggttttggtaaagtgggaatgcttggcaaattgggttgtgtagttgtttgcaaaaggttgcgagcttctaggttcatgtttga |
27102812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 27096613 - 27096527
Alignment:
| Q |
187 |
tgttggttttggtaaagtgggaatggttggtaaatttggttgtgt---tgtttgcaaaagatgacgagcctctaggctcatgtttga |
270 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||||| |||||||| |||||||||||| | ||||| ||||||||||||||||| |
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| T |
27096613 |
tgttggatttggcaaagtgggaatgtttggcaaattgggttgtgtggttgtttgcaaaaggtttcgagcttctaggctcatgtttga |
27096527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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