View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_69 (Length: 345)
Name: NF7708A_low_69
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 42138643 - 42138968
Alignment:
| Q |
1 |
gattagtaatagttgcttaacatagatagataaatgaaatgttaaaaaaccatgttaaacttcaacatacttatttctacaaggtaaagacttaggcagc |
100 |
Q |
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| T |
42138643 |
gattagtaatagtcgcttaacatagatagataaatgaaatgttaaaaaaccatgttaaacttcaacatacttatttctacaaggtaaagacttaggcagc |
42138742 |
T |
|
| Q |
101 |
gaagctagcagcagtgatgcctttgctctttcaagattagtctgtttgtgagaccttatatgctctggaattctttttgtgcctatcttctgaagtccaa |
200 |
Q |
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| T |
42138743 |
gaagctagcagcagtgatgcctttgctctttcaagattagtctgtttgtgagaccttatatgctctggaattctttttgtgcctatcttctgaagtccaa |
42138842 |
T |
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| Q |
201 |
agaaccgtcccttgtgcagattctgtatcatttacacaacaaaaatttcataggaactcataaacacacaaaataatacaaattaatacaagtgaacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42138843 |
agaaccgtcccttgtgcagattctgtatcatttacacaacaaaaatttcataggaactcataaacacaaaaaataatacaaattaatacaagtgaacaat |
42138942 |
T |
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| Q |
301 |
aatgttcatactgcagctaactgatg |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42138943 |
aatgttcatactgcagctaactgatg |
42138968 |
T |
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