View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_7 (Length: 530)

Name: NF7708A_low_7
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_7
NF7708A_low_7
[»] chr3 (3 HSPs)
chr3 (16-506)||(46239893-46240383)
chr3 (24-504)||(23541295-23541775)
chr3 (332-505)||(30038134-30038307)
[»] chr7 (3 HSPs)
chr7 (16-514)||(3437088-3437574)
chr7 (242-408)||(14798952-14799118)
chr7 (242-408)||(15245944-15246110)
[»] chr5 (1 HSPs)
chr5 (329-505)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (347-505)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (329-505)||(6869027-6869201)
chr4 (350-505)||(4497222-4497377)
chr4 (283-396)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (221-505)||(18005-18289)
[»] chr6 (1 HSPs)
chr6 (221-505)||(24676042-24676326)
[»] scaffold0140 (1 HSPs)
scaffold0140 (284-384)||(40053-40153)
[»] chr1 (1 HSPs)
chr1 (402-505)||(36915336-36915439)
[»] scaffold0121 (1 HSPs)
scaffold0121 (283-396)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (283-396)||(18131561-18131674)


Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Original strand, 46239893 - 46240383
Alignment:
Q  16 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46239893 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat 46239992  T
Q  116 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  46239993 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag 46240092  T
Q  216 gattacaacccaggcttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca 315  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46240093 gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggttgtca 46240192  T
Q  316 tctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 415  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240193 tctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 46240292  T
Q  416 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240293 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa 46240383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 24 - 504
Target Start/End: Original strand, 23541295 - 23541775
Alignment:
Q  24 tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg 123  Q
    |||||||||||||||| || |||||||||||||| || |  |||||||| ||||| ||||||||||| |||||||  |||||||| |||||||||||| |    
T  23541295 tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag 23541394  T
Q  124 tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa 223  Q
     |||||  | |||||  |||| |||||||| ||||||||||| |||  | ||||||| |  ||||  || | ||| ||||| |||   |||  | | |||    
T  23541395 gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa 23541494  T
Q  224 cccaggcttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaaga 323  Q
    |||||| |||| ||||| |||||||||||||||||||| || ||||| || |  ||||| ||||| |||||| ||||||| ||||| |||||| ||||||    
T  23541495 cccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatggatgtcatttaaaga 23541594  T
Q  324 caaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaag 423  Q
    ||||||||||||||||||| || || | ||||||||| |||||||||||||| || |||||  | |||||||| || || |||||  |||| |||| |||    
T  23541595 caaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttccattggcatttggaatagtagaaacaaagtgtagggaaag 23541694  T
Q  424 ctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt 504  Q
    |||||| |||||||||||| |  |  ||||||||||||| |  ||||  |||||||| |||||||||||||| ||||||||    
T  23541695 ctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt 23541775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 332 - 505
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
Q  332 gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt 431  Q
    |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||||| |    
T  30038307 gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat 30038208  T
Q  432 ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    |||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038207 ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 3437574 - 3437088
Alignment:
Q  16 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  3437574 ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 3437487  T
Q  116 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  3437486 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag 3437387  T
Q  216 gattacaacccaggcttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca 315  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437386 gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca 3437287  T
Q  316 tctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 415  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437286 tctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 3437187  T
Q  416 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgatgtc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3437186 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgttgtc 3437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 408
Target Start/End: Complemental strand, 14799118 - 14798952
Alignment:
Q  242 tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac 341  Q
    ||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||     
T  14799118 tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat 14799019  T
Q  342 tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac 408  Q
    |  |  | ||||| || ||||| |||||||| || ||||||||| | || |||||  ||||||||||    
T  14799018 tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 408
Target Start/End: Complemental strand, 15246110 - 15245944
Alignment:
Q  242 tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac 341  Q
    ||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||     
T  15246110 tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat 15246011  T
Q  342 tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac 408  Q
    |  |  | ||||| || ||||| |||||||| || ||||||||| | || |||||  ||||||||||    
T  15246010 tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 329 - 505
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
Q  329 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 428  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  29878233 tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 29878332  T
Q  429 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    | ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878333 aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 347 - 505
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
Q  347 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 446  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  3921357 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 3921258  T
Q  447 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    || |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921257 tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 329 - 505
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
Q  329 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 428  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  429 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    | ||||||||| |||||||| |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869127 aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 505
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
Q  350 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 449  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||||||||||| ||||| |||||| || ||     
T  4497377 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga 4497278  T
Q  450 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497277 tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 396
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
Q  283 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 382  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||    
T  11318404 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt 11318305  T
Q  383 cctcttgcatttgg 396  Q
    ||| | ||||||||    
T  11318304 cctttagcatttgg 11318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 221 - 505
Target Start/End: Original strand, 18005 - 18289
Alignment:
Q  221 caacccaggcttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 320  Q
    ||||||||  |||| ||||| |||||||  |||||||||||||| | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  18005 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 18104  T
Q  321 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 420  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  18105 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggc 18204  T
Q  421 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18205 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 221 - 505
Target Start/End: Complemental strand, 24676326 - 24676042
Alignment:
Q  221 caacccaggcttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 320  Q
    ||||||||  |||| ||||| |||||||  |||||||||||||| | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  24676326 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 24676227  T
Q  321 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 420  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  24676226 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggc 24676127  T
Q  421 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 505  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676126 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  284 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 383  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  384 c 384  Q
    |    
T  40053 c 40053  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  402 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 501  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  502 ggta 505  Q
    ||||    
T  36915436 ggta 36915439  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 396
Target Start/End: Original strand, 43494 - 43607
Alignment:
Q  283 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 382  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  43494 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 43593  T
Q  383 cctcttgcatttgg 396  Q
    ||| | ||||||||    
T  43594 cctttagcatttgg 43607  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 396
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
Q  283 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 382  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  18131674 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 18131575  T
Q  383 cctcttgcatttgg 396  Q
    ||| | ||||||||    
T  18131574 cctttagcatttgg 18131561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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