View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_72 (Length: 342)
Name: NF7708A_low_72
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 1425294 - 1425616
Alignment:
| Q |
8 |
tcatgctaatcaatgaaattagcttcttaaaaaatttgaaagtttatagtgtgactcaggaataggtggagtgcaaggtaatctcaatgttttcttttgg |
107 |
Q |
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| T |
1425294 |
tcatgctaatcaatgaaattagcttcttaaaaaatttgaaagtttatagtgtgactcaggaataggtggagtgcaaggtaatctcaatgttttcttttgg |
1425393 |
T |
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| Q |
108 |
aagtaaggatgctgtttccatcttttcattctgacacaatcttatcaatttaaccattgtctgccaatgtatggactatagagttatcagtgttgttaga |
207 |
Q |
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| T |
1425394 |
aagtaaggatgctgtttccatcttttcattctgacacaatcttatcaatttaaccattgtctgccaatgtatggactatagagttatcagtgttgttaga |
1425493 |
T |
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| Q |
208 |
taacccgtatagcgctgctacactgctattacacatataggatttggagtaacccccgatgaaagtcgatatgcactattgcgatttcgctaccactgca |
307 |
Q |
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| T |
1425494 |
taacccgtatagcgctgctacactgctattacacatctaggatttggagtaacccccgatgaaagtcgatatgcactattgcgatttcgctaccactgca |
1425593 |
T |
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| Q |
308 |
aatgccgttacgttttgcatatt |
330 |
Q |
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| T |
1425594 |
aatgccgttacgttttgcatatt |
1425616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 17907630 - 17907588
Alignment:
| Q |
198 |
tgttgttagataacccgtatagcgctgctacactgctattaca |
240 |
Q |
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| T |
17907630 |
tgttgttaaataactggtatagcgctgctacactgctattaca |
17907588 |
T |
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