View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_76 (Length: 335)
Name: NF7708A_low_76
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 7303625 - 7303778
Alignment:
| Q |
6 |
agttggtaatgaggcaaaaatagaagttatagttaatctcaaattctatatccacaatataatctttaatgccaacaaatattcca-ttaaaaatttctt |
104 |
Q |
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| T |
7303625 |
agttggtaatgaggcaaaaatagaagtt------aatctcaaattctatatccacaatataatctttaatgccaacaaatattccatttgaaaattcctt |
7303718 |
T |
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| Q |
105 |
tcacttaacattttggataaaaatagaaattatcatgtgaagattttggctcaaggtcaa |
164 |
Q |
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| T |
7303719 |
tcacttaacattttggataaaaatagaaattatcatggtaagaatttggctcaaggtcaa |
7303778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 7303844 - 7303959
Alignment:
| Q |
191 |
acatgttggaatgttatagaaaatacggaaatttgctataggcgaagccttcctagccaaactatgagcaacttggtttgtttgtctcctaataaactta |
290 |
Q |
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| T |
7303844 |
acatgttggaatgttatagaaaatacggaaattagctataggcgaagcctccctaaccaaactatgagcaacttggtttgtttgtctcctaataaactta |
7303943 |
T |
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| Q |
291 |
atattagagttcataa |
306 |
Q |
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| T |
7303944 |
acattagagttcataa |
7303959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 791991 - 791947
Alignment:
| Q |
243 |
ctagccaaactatgagcaacttggtttgtttgtctcctaataaac |
287 |
Q |
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| T |
791991 |
ctagcaaaactatgagcaacttcgttggtttgtctccgaataaac |
791947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 4052909 - 4052865
Alignment:
| Q |
243 |
ctagccaaactatgagcaacttggtttgtttgtctcctaataaac |
287 |
Q |
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| T |
4052909 |
ctagcaaaactatgagcaacttcgttggtttgtctccgaataaac |
4052865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 25070898 - 25070942
Alignment:
| Q |
243 |
ctagccaaactatgagcaacttggtttgtttgtctcctaataaac |
287 |
Q |
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| T |
25070898 |
ctagcaaaactatgagcaacttcgttggtttgtctccgaataaac |
25070942 |
T |
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