View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_86 (Length: 322)
Name: NF7708A_low_86
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_86 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 63 - 303
Target Start/End: Complemental strand, 21626083 - 21625843
Alignment:
| Q |
63 |
ttctaatgtaaaggaaaggaaggatatattggtcgtttttactacccaagttgcatacaccaattggtgagtaatattttcattggagcacaagagagcc |
162 |
Q |
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| T |
21626083 |
ttctaatgtaaaggaaaggaaggatatattggtcgttttcactacccaagttgcatacaccaattggtgagtaatattttcattggagcacaagagagcc |
21625984 |
T |
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| Q |
163 |
aaggaaccgaaattgaaggattgatgcaggacaagagtccttgttggagacagagttttgggtcaagactgcatcaagaggaagttgttctttgaggtgg |
262 |
Q |
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| T |
21625983 |
aaggaaccgaaattgaaggattgatgcaggacaagagtgcttgttggagacagagttttgggtcaagactgcatcaagaggaagttgttctttgaggtgg |
21625884 |
T |
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| Q |
263 |
gtttcctctcctagacttgaatttaaataattagaattgat |
303 |
Q |
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| T |
21625883 |
gtttcctctcctagacttgaatttaaataattagaattgat |
21625843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 21626702 - 21626749
Alignment:
| Q |
80 |
ggaaggatatattggtcgtttttactacccaagttgcatacaccaatt |
127 |
Q |
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| T |
21626702 |
ggaaggatatattggtcgttttcactacccaagttgcatacaccaatt |
21626749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 336284 - 336397
Alignment:
| Q |
175 |
ttgaaggattgatgcaggacaagagtccttgttggagacagagttttgggtcaagactgcatcaagaggaagttgttctttgaggtgggtttcctctcct |
274 |
Q |
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| T |
336284 |
ttgaaggattgatgcaggacaagagtccttgttggagacagagttttgggtcaagactgcatcaaccagaagttgtcatttgaggtgggtttcctctcct |
336383 |
T |
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| Q |
275 |
agacttgaatttaa |
288 |
Q |
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| T |
336384 |
aggcttgaacttaa |
336397 |
T |
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