View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_9 (Length: 482)
Name: NF7708A_low_9
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 251 - 460
Target Start/End: Complemental strand, 30198196 - 30197987
Alignment:
| Q |
251 |
tgttgatttgaaagagtcctcacataatccaaactttcatgttgattgttgctcatgagtggctgcttgctaattatcatagaagtagatgaggacttga |
350 |
Q |
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| T |
30198196 |
tgttgagttgaaggagtcctcatataatccaaactttcatgttgtttgttgctcatgagtggctggttactaattatcatagaagtagatgaggacttga |
30198097 |
T |
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| Q |
351 |
agttttactcacttgttctccttgtcgaaatacaaatgaaacaatcatccatgttctaagatattgtgtttaaccaacctagatttggatcatgttaatt |
450 |
Q |
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| T |
30198096 |
agttttactcacctgttctccttgtcgaaatacaaatgaaacaatcatccatgttctaagatattgtgtttaaccaacctagatttggatcatgttaatt |
30197997 |
T |
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| Q |
451 |
gaacagtact |
460 |
Q |
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|||||||||| |
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| T |
30197996 |
gaacagtact |
30197987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 30198406 - 30198245
Alignment:
| Q |
89 |
catggtcgatgtaaagttatttcacattgacatttaatggaaactcgtgaaaatgctattgaagtccacattataaaatttaaacacatcaatgattatt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
30198406 |
catggtcgatgtaaagttatttcacattgacatttaatggaaactcgtgaaaatgctattgaagtccacattataaaatttaaacatatcagttattatt |
30198307 |
T |
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| Q |
189 |
ccaacacttaaagaagcaatctttcatttctcatgacaatcttcactttcaaagcgcttcca |
250 |
Q |
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| T |
30198306 |
ccaacacttaaagaagcaatctttcatttctcatgacaatcttcactttcaaagcgtttcca |
30198245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 11142105 - 11142148
Alignment:
| Q |
258 |
ttgaaagagtcctcacataatccaaactttcatgttgattgttg |
301 |
Q |
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| T |
11142105 |
ttgaaagagtcctcacaaaatccaaacattcatgtggattgttg |
11142148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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