View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_96 (Length: 306)
Name: NF7708A_low_96
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 38 - 285
Target Start/End: Original strand, 24215858 - 24216105
Alignment:
| Q |
38 |
agcaagggtacgcaaatcaacataattcgccaagtggagaccatgatcttctagaagctttacaacgtctgctttgattccgataccaatgaatctgttg |
137 |
Q |
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| T |
24215858 |
agcaaggttacgcaaatcaacataattcgccaagtggagaccatgatcttctagaagctttacaacgtctgctttgattccgataccaatgaatctgttg |
24215957 |
T |
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| Q |
138 |
tgagggcttgcaaggtagttagagagcgaggcacaaacgtagggggagtggatgatctggaaaacgaggcagaagttgttgatgcagagttggagagtgg |
237 |
Q |
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| T |
24215958 |
tgagggcttgcgaggtagttagagagcgaagcacaaacgtagggggagtggatgatctggaaaacgaggcagaagttgttgatgcagagttggagagtgg |
24216057 |
T |
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| Q |
238 |
cggctgagtttgattgactctgttcgatgtggaggccgatgatggggg |
285 |
Q |
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| T |
24216058 |
cggctgagtttgattgactccgtttgatgtggaggccgatgatggggg |
24216105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 283
Target Start/End: Original strand, 24210099 - 24210346
Alignment:
| Q |
36 |
gcagcaagggtacgcaaatcaacataattcgccaagtggagaccatgatcttctagaagctttacaacgtctgctttgattccgataccaatgaatctgt |
135 |
Q |
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| T |
24210099 |
gcagcaagggaatgcaaattaacataatttgccaagtggagatcatgattttttagaagctccttaacatcttcttttgctccaaccccaacgaatctgt |
24210198 |
T |
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| Q |
136 |
tgtgagggcttgcaaggtagttagagagcgaggcacaaacgtagggggagtggatgatctggaaaacgaggcagaagttgttgatgcagagttggagagt |
235 |
Q |
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| T |
24210199 |
tgttagggttagaaaggtagttggagagggaggcgttaagatagggggagtggaagatttggtaaacgaggcagaagttgttaatgcagagggtgagagt |
24210298 |
T |
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| Q |
236 |
ggcggctgagtttgattgactctgttcgatgtggaggccgatgatggg |
283 |
Q |
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| T |
24210299 |
ggctgctgagtttgatggactccgttcaatgtggaggccgatgatggg |
24210346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 24217362 - 24217433
Alignment:
| Q |
121 |
taccaatgaatctgttgtgagggcttgcaaggtagttagagagcgaggcacaaacgtagggggagtggatgatc |
194 |
Q |
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| T |
24217362 |
taccaatgaatctgttgtgagggcttgcaaggtaattagaga--gaggcaaaaacgtagggggggtggatgatc |
24217433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 24224810 - 24224864
Alignment:
| Q |
178 |
agggggagtggatgatctggaaaacgaggcagaagttgttgatgcagagttggag |
232 |
Q |
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| T |
24224810 |
agggggagtgcatgatttggaaaacgaggcagcggttgttgatacagagctggag |
24224864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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