View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_97 (Length: 301)
Name: NF7708A_low_97
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_97 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8156877 - 8156580
Alignment:
| Q |
1 |
atcaaacatatagcctccatcaccacttaatacacgatttcctgagaccacggtgaaaattgaaagtgccatttgaagaaggttgtatgcaaacccaatt |
100 |
Q |
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| T |
8156877 |
atcaaacatatagcctccatcaccacttaatacacgatttcctgagaccacggtgaaaattgaaagtgccatttgaagaaggttgtatgcaaacccaatt |
8156778 |
T |
|
| Q |
101 |
actattgtggagatcatgtatctaca---tttaaataattgtaccaagttaataaagaatgaaagaatataactcttttttctatattagttcatttgaa |
197 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8156777 |
actattgtggagatcatgtatctacaacatttaaataattgtaccaagttaataaagaatgaaagaatataactcttttttctatattagttcatttgaa |
8156678 |
T |
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| Q |
198 |
tcactgattttatcaataatttgtttgtagccatatacgataggattcattagtatatagaaggcctcttccattaaaaaagcacagtaaacacatcc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8156677 |
ccactgattttatcaataatttgtttgtagccatatatgataggattcattagtatatagaaggcctcttccattaaaaaagcacagtaaacacatcc |
8156580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8163215 - 8163088
Alignment:
| Q |
1 |
atcaaacatatagcctccatcaccacttaatacacgatttcctgagaccacggtgaaaattgaaagtgccatttgaagaaggttgtatgcaaacccaatt |
100 |
Q |
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||||||| |||||||| | ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||| |
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| T |
8163215 |
atcaaacttatagcctgcgccaccatttaatacacgatttcctgataccacactgaaaattgaaagtgccatttgtaggcaattgtatgcaaacccaatg |
8163116 |
T |
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| Q |
101 |
actattgtggagatcatgtatctacatt |
128 |
Q |
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|||||||| |||| |||||||||||||| |
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| T |
8163115 |
actattgtcgagagcatgtatctacatt |
8163088 |
T |
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