View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_high_10 (Length: 382)

Name: NF7708_high_10
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_high_10
NF7708_high_10
[»] chr1 (19 HSPs)
chr1 (71-365)||(3265301-3265596)
chr1 (181-365)||(1153672-1153855)
chr1 (182-362)||(1240428-1240612)
chr1 (209-363)||(45385209-45385365)
chr1 (247-365)||(8246730-8246851)
chr1 (203-324)||(35405375-35405496)
chr1 (17-75)||(3263700-3263761)
chr1 (244-362)||(33735760-33735878)
chr1 (203-363)||(35204188-35204344)
chr1 (274-363)||(16141556-16141645)
chr1 (156-315)||(29062288-29062447)
chr1 (203-300)||(22667164-22667261)
chr1 (293-362)||(29664192-29664261)
chr1 (203-304)||(49762420-49762520)
chr1 (209-365)||(23897875-23898026)
chr1 (312-360)||(30717893-30717941)
chr1 (183-267)||(36382974-36383059)
chr1 (233-337)||(15103046-15103150)
chr1 (188-228)||(30718216-30718256)
[»] chr5 (14 HSPs)
chr5 (203-363)||(32257654-32257814)
chr5 (203-365)||(3193491-3193653)
chr5 (234-363)||(502805-502931)
chr5 (184-363)||(16569252-16569429)
chr5 (164-363)||(20870634-20870827)
chr5 (230-363)||(16570492-16570625)
chr5 (230-365)||(12263642-12263779)
chr5 (233-363)||(36161044-36161170)
chr5 (156-363)||(39542410-39542615)
chr5 (311-365)||(7887264-7887318)
chr5 (180-324)||(7886560-7886702)
chr5 (183-362)||(8934060-8934240)
chr5 (233-363)||(3596911-3597041)
chr5 (319-365)||(10325717-10325763)
[»] chr6 (18 HSPs)
chr6 (165-365)||(12174318-12174518)
chr6 (180-365)||(9815619-9815803)
chr6 (182-363)||(31787815-31787993)
chr6 (203-365)||(35121917-35122082)
chr6 (156-366)||(34573110-34573320)
chr6 (203-362)||(34540829-34540988)
chr6 (203-365)||(10668850-10669009)
chr6 (203-304)||(33344880-33344981)
chr6 (203-304)||(34329792-34329893)
chr6 (203-342)||(31153606-31153745)
chr6 (183-365)||(33607007-33607192)
chr6 (309-363)||(34969396-34969450)
chr6 (317-365)||(6274014-6274062)
chr6 (158-262)||(35067103-35067207)
chr6 (319-365)||(4337976-4338022)
chr6 (202-268)||(18991742-18991808)
chr6 (336-365)||(33344794-33344823)
chr6 (210-283)||(34969848-34969920)
[»] chr8 (19 HSPs)
chr8 (203-365)||(13580327-13580489)
chr8 (202-324)||(13236221-13236343)
chr8 (233-365)||(26835593-26835725)
chr8 (203-363)||(9191200-9191351)
chr8 (245-365)||(22930319-22930439)
chr8 (182-363)||(31383474-31383655)
chr8 (264-365)||(34142022-34142123)
chr8 (165-365)||(4350596-4350802)
chr8 (188-315)||(31277936-31278064)
chr8 (247-366)||(22486608-22486727)
chr8 (295-365)||(28376655-28376725)
chr8 (165-288)||(24606847-24606969)
chr8 (203-326)||(43872544-43872667)
chr8 (181-315)||(41849429-41849562)
chr8 (314-362)||(12181824-12181872)
chr8 (314-362)||(12426252-12426300)
chr8 (203-315)||(39295475-39295586)
chr8 (319-361)||(21348439-21348481)
chr8 (203-324)||(26801891-26802011)
[»] chr4 (28 HSPs)
chr4 (203-365)||(23870045-23870206)
chr4 (203-365)||(2113837-2113999)
chr4 (234-362)||(36071557-36071685)
chr4 (187-362)||(12320404-12320580)
chr4 (216-362)||(7102144-7102289)
chr4 (181-363)||(3643092-3643273)
chr4 (232-365)||(29118469-29118603)
chr4 (182-365)||(7853293-7853475)
chr4 (187-361)||(35372063-35372230)
chr4 (230-363)||(4596455-4596588)
chr4 (203-365)||(5627494-5627651)
chr4 (165-357)||(43515787-43515980)
chr4 (203-289)||(48653742-48653828)
chr4 (184-363)||(53178749-53178926)
chr4 (182-365)||(25779590-25779773)
chr4 (158-252)||(8732999-8733093)
chr4 (245-363)||(15986881-15986999)
chr4 (308-365)||(47059688-47059745)
chr4 (308-365)||(47082057-47082114)
chr4 (292-363)||(12167050-12167121)
chr4 (202-324)||(20811475-20811597)
chr4 (153-255)||(37226342-37226444)
chr4 (291-341)||(40807927-40807977)
chr4 (319-365)||(38087657-38087703)
chr4 (291-365)||(55147883-55147957)
chr4 (230-302)||(40807842-40807914)
chr4 (180-256)||(51002624-51002700)
chr4 (203-303)||(55147639-55147739)
[»] chr3 (19 HSPs)
chr3 (233-363)||(33510096-33510226)
chr3 (182-352)||(33682610-33682780)
chr3 (182-365)||(168635-168814)
chr3 (200-362)||(15670919-15671078)
chr3 (242-363)||(54417030-54417151)
chr3 (203-365)||(8266563-8266726)
chr3 (230-365)||(11383589-11383726)
chr3 (156-330)||(27538709-27538881)
chr3 (182-365)||(2758073-2758258)
chr3 (203-304)||(11365106-11365207)
chr3 (183-365)||(39838467-39838645)
chr3 (203-363)||(17713276-17713431)
chr3 (203-363)||(19014505-19014660)
chr3 (313-363)||(27541147-27541197)
chr3 (269-337)||(7741724-7741792)
chr3 (203-317)||(47000835-47000948)
chr3 (203-304)||(33290758-33290858)
chr3 (319-363)||(18257971-18258015)
chr3 (312-360)||(42417929-42417977)
[»] chr7 (26 HSPs)
chr7 (203-363)||(26914312-26914472)
chr7 (204-363)||(35812614-35812774)
chr7 (203-361)||(3940621-3940778)
chr7 (202-362)||(13431633-13431792)
chr7 (156-362)||(21828162-21828367)
chr7 (165-365)||(40351700-40351899)
chr7 (205-356)||(12177813-12177965)
chr7 (203-365)||(33480460-33480621)
chr7 (203-324)||(3351119-3351240)
chr7 (201-365)||(9429304-9429467)
chr7 (232-351)||(42335943-42336062)
chr7 (232-362)||(22318662-22318791)
chr7 (203-324)||(26448411-26448533)
chr7 (203-345)||(26912345-26912486)
chr7 (233-358)||(21129326-21129451)
chr7 (306-365)||(21292802-21292861)
chr7 (203-363)||(36066113-36066271)
chr7 (203-324)||(15133276-15133397)
chr7 (312-363)||(31329665-31329716)
chr7 (291-362)||(32982336-32982407)
chr7 (184-227)||(32982464-32982507)
chr7 (319-365)||(30095845-30095891)
chr7 (320-365)||(15134537-15134582)
chr7 (336-365)||(37996507-37996536)
chr7 (241-321)||(36572901-36572980)
chr7 (230-262)||(37996570-37996602)
[»] scaffold0777 (1 HSPs)
scaffold0777 (203-365)||(5844-6005)
[»] chr2 (25 HSPs)
chr2 (221-363)||(5163792-5163934)
chr2 (203-324)||(36186579-36186700)
chr2 (230-363)||(30257776-30257910)
chr2 (245-365)||(40876936-40877056)
chr2 (165-362)||(36506809-36507000)
chr2 (203-330)||(16646928-16647055)
chr2 (202-361)||(38561844-38562002)
chr2 (182-363)||(15925477-15925661)
chr2 (232-363)||(28556603-28556734)
chr2 (203-352)||(38134084-38134230)
chr2 (187-320)||(2886978-2887111)
chr2 (180-363)||(18197338-18197520)
chr2 (247-366)||(17271273-17271395)
chr2 (234-360)||(18829973-18830100)
chr2 (183-288)||(38608294-38608400)
chr2 (321-366)||(28226833-28226878)
chr2 (203-324)||(37912332-37912453)
chr2 (307-362)||(38035390-38035445)
chr2 (319-365)||(4206647-4206693)
chr2 (293-363)||(6621319-6621389)
chr2 (222-356)||(35280919-35281055)
chr2 (166-248)||(40705853-40705935)
chr2 (233-322)||(26350440-26350528)
chr2 (220-304)||(4206325-4206409)
chr2 (335-363)||(34345898-34345926)
[»] scaffold0531 (1 HSPs)
scaffold0531 (251-366)||(9698-9813)
[»] scaffold0527 (2 HSPs)
scaffold0527 (203-288)||(1720-1805)
scaffold0527 (203-288)||(9783-9868)
[»] scaffold1173 (1 HSPs)
scaffold1173 (204-288)||(403-487)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 71 - 365
Target Start/End: Original strand, 3265301 - 3265596
Alignment:
Q  71 ctaagatttacaaataaaagctataacatccaattgaaacaaaaagaacaagtaaagtaaaattagataggcttgcatgaccgttggtcttaaaattttt 170  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |  || |  || |||||||| ||||||    
T  3265301 ctaagatttacaaataaaagctataacatccaactgaaacaaaaagaacaagtaaagtaaaaatagataggcctcgattagagtcggtcttaagattttt 3265400  T
Q  171 agtgtcttaggcgaatcaataaagttgtacta--ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagt 268  Q
    |||||||||| |||||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  3265401 agtgtcttagacgaatcaataaagttgtattacattttaattattcgaatgtctttcttcgtgcattttttgttgcaaaagattcattgataataaaagt 3265500  T
Q  269 tctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3265501 tctcttaaaacatattttcataagaatt-atcaaagggagttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattttggt 3265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 181 - 365
Target Start/End: Original strand, 1153672 - 1153855
Alignment:
Q  181 gcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaaca 280  Q
    ||||||||||||||||||||  |||||||||| ||||| | ||||||| ||| ||||||||| ||||||||| ||||| ||| |||||||||||||||||    
T  1153672 gcgaatcaataaagttgtaccgttttaattatccgaatatctttcttcttgcgttttttgttgcaaaagattaattgaaaatcaaagttctcttaaaaca 1153771  T
Q  281 tattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||| |  ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  1153772 tatttttaatagaattaattaaa-ggagttaaaaacaaatataactatttaatactaactactaaataaaaataataattgtggt 1153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 362
Target Start/End: Complemental strand, 1240612 - 1240428
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctct----taaa 277  Q
    |||| ||||||| |||| |  |||||||||| |  || ||||||||| ||||||||||||| ||||||||||||| |||||  |||||||||     |||    
T  1240612 cgaaacaataaaattgtgcccttttaattatcctgatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaaaa 1240513  T
Q  278 acatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    | |||||||||  |||||||||||||| |  ||||||| |||||||| ||| || ||||||||||||||||||||||||||||||    
T  1240512 atatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataatttt 1240428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 209 - 363
Target Start/End: Original strand, 45385209 - 45385365
Alignment:
Q  209 ttattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaatt----aatcaaag 304  Q
    |||||| ||| |||||| || || |||||||||| ||||||||||||||| ||| || |||||||  ||||||||| |||  || |||    ||| ||||    
T  45385209 ttattcaaatatttttcctcttgtattttttgttgcaaaagattcattgaaaatcaaggttctct--aaacatattatcaatagtatttattaattaaag 45385306  T
Q  305 ggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  45385307 ggagttaaaaagaaatatatccatttaatacaaactactaaataaaaataataattttg 45385365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 365
Target Start/End: Original strand, 8246730 - 8246851
Alignment:
Q  247 aagattcattgataataaaagttctcttaaaaca---tattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactact 343  Q
    |||||||||| ||||| |||||||| | |||| |   ||||||||  |||||||||||||   | ||||||| |||||||||||| || ||||||||| |    
T  8246730 aagattcatttataattaaagttctataaaaaaaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactatt 8246829  T
Q  344 aagtaaaaataataattttggt 365  Q
    ||||||||||||||||||||||    
T  8246830 aagtaaaaataataattttggt 8246851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 35405496 - 35405375
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||| ||||||||||||| ||||| |||||||  |||| |||||| ||| |||| || |||| |  | ||||||||||    
T  35405496 ttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttctaatcaaagttatctaaaaatattttttaaatataattaatcaa 35405397  T
Q  303 agggagttaaaaataaatatat 324  Q
    || || ||||||| ||||||||    
T  35405396 agcgaattaaaaagaaatatat 35405375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 3263700 - 3263761
Alignment:
Q  17 gaaatatagaccaacgaaagagaaacat---acaatgagtataagaaatactcaagtctaag 75  Q
    ||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||    
T  3263700 gaaatatagaccaacgaaagagaaacatacaacaatgagtataagaattactcaagtctaag 3263761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 33735760 - 33735878
Alignment:
Q  244 caaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactact 343  Q
    ||||||||||||| ||||| |||||| ||| |||| |||||||||  | |||||||||||   | ||||||| |||||||| |||  |||||||||||||    
T  33735760 caaaagattcatttataatcaaagttgtctaaaaatatattttcaatataattaatcaaaccaaattaaaaagaaatatatttatacaatactaactact 33735859  T
Q  344 aagtaaaaataataatttt 362  Q
    |  ||||| ||||||||||    
T  33735860 agataaaattaataatttt 33735878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 363
Target Start/End: Original strand, 35204188 - 35204344
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||||||||| ||| || | ||||| || ||||| ||||||| ||||| ||| |||||| |||| || || |||  | ||||||||||    
T  35204188 ttttaattattccaatgttttttttcttgtactttttattgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaa 35204286  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||  | |||||   |||||| | ||| ||||||||| ||||||||||||||||||||||||    
T  35204287 agcaatttaaa---aaatatttttatataatactaattactaagtaaaaataataattttg 35204344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 16141556 - 16141645
Alignment:
Q  274 taaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||||| |||||||||| |||||| |||||||  ||||||||| |||||| | ||| |||||||||||||||| ||| |||||||| ||||    
T  16141556 taaaatatattttcattagaattgatcaaagaaagttaaaaacaaatatttatatataatactaactactaaataacaataataaatttg 16141645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 315
Target Start/End: Original strand, 29062288 - 29062447
Alignment:
Q  156 ggtcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcat 255  Q
    |||||||| |||||| |||| |||  |||| ||||||| |  | || ||||||||| || ||| | ||||||| || |||||||||| ||||||||| ||    
T  29062288 ggtcttaagatttttggtgttttaaacgaaacaataaaataatgctcttttaattactccaatatatttcttcttgtattttttgttgcaaaagatttat 29062387  T
Q  256 tgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaa 315  Q
    | |||||||||||||||| | || ||||||| |   ||||||||| ||| || |||||||    
T  29062388 ttataataaaagttctctaacaatatattttaaattgaattaatccaagtgaattaaaaa 29062447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 22667164 - 22667261
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatc 300  Q
    |||||||||||| ||| ||||||||| |||||||||| || ||||| ||||||| ||||| |||||| ||  |||| | |||||||  ||||||||||    
T  22667164 ttttaattattcaaatatttttcttcttgcattttttattgcaaaatattcatttataatcaaagttatccaaaaataaattttcaatagaattaatc 22667261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 29664261 - 29664192
Alignment:
Q  293 aattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    |||||||||||  || ||||||| ||||||| |||| || |||||| |||||||||||||||||||||||    
T  29664261 aattaatcaaaacgaattaaaaagaaatatacctatatagtactaattactaagtaaaaataataatttt 29664192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 49762420 - 49762520
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| |||| |||| |  ||||||||||||| || | ||||| ||||| |||||||||| |||| |||||||||  ||||||||||||    
T  49762420 ttttaattattctaatatttt-cttcttatattttttgttacacaaaactcatttataatcaaagttctctaaaaatatattttcaatagaattaatcaa 49762518  T
Q  303 ag 304  Q
    ||    
T  49762519 ag 49762520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 365
Target Start/End: Original strand, 23897875 - 23898026
Alignment:
Q  209 ttattcgaatgtttttcttcgtgcatttttt--gttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaaggg 306  Q
    |||||| ||| ||||||||| ||||||||||  ||| ||||| ||||||| ||||| |||||| ||| |||| || |||  ||| |||||||||||||      
T  23897875 ttattcaaatatttttcttcttgcattttttttgttgcaaaatattcatttataatcaaagttatctaaaaatatttttaaata-gaattaatcaaagca 23897973  T
Q  307 agttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    | |||||||  ||||||| |      ||||||||||||||||||||| |||||||||||    
T  23897974 aattaaaaaggaatatatat------tactaactactaagtaaaaatgataattttggt 23898026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 30717941 - 30717893
Alignment:
Q  312 aaaataaatatatctatttaatactaactactaagtaaaaataataatt 360  Q
    |||| |||||||||||| ||||| ||| |||||||||||||||||||||    
T  30717941 aaaaaaaatatatctatataatattaattactaagtaaaaataataatt 30717893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 36383059 - 36382974
Alignment:
Q  183 gaatcaataaagttgtac-tattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaag 267  Q
    |||| ||||||||||| | | ||||||||||| |||||||||||||| | |||||||||||   ||| ||||||| ||||| ||||    
T  36383059 gaattaataaagttgtgccttttttaattatttgaatgtttttcttcatacattttttgttgtgaaatattcattcataatcaaag 36382974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 15103046 - 15103150
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaa 332  Q
    |||||||||| || |||||||||| ||||| |||||||||| |||| ||   ||||  |||||||||||||   |  |||||| |||||||||||| ||     
T  15103046 attttttgttgcacaagattcatttataatcaaagttctctaaaaatattacttcaatagaattaatcaaaacaaagtaaaaagaaatatatctatatag 15103145  T
Q  333 tacta 337  Q
    |||||    
T  15103146 tacta 15103150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 30718256 - 30718216
Alignment:
Q  188 aataaagttgtactattttaattattcgaatgtttttcttc 228  Q
    ||||||||||||| |||||||||||| |||||| |||||||    
T  30718256 aataaagttgtacaattttaattatttgaatgtctttcttc 30718216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 203 - 363
Target Start/End: Original strand, 32257654 - 32257814
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||| ||| |||||||||||||||| || ||||||| ||||| |||||||||| |||  |||||||||  | ||||||||||    
T  32257654 ttttaattattccaatttttttgttcttgcattttttgttacacaaaattcatttataatcaaagttctctaaaagtatattttcaataaaattaatcaa 32257753  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||  | ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  32257754 agcaaattaaaaaaaaatatatctatgtaatactaactactaagtaaaaataattattttg 32257814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 3193491 - 3193653
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||||||| |||||| ||||||| |||||||||| || ||||||||||||| ||||| |||||||| | ||||||||||||||  | ||||| ||||    
T  3193491 ttttaattatttgaatgtctttcttcttgcattttttattgcaaaagattcattcataatcaaagttctttaaaaacatattttcaatataattattcaa 3193590  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||  | ||||||| |||||||||||| || ||||| ||||||  |||||||||||||||||||    
T  3193591 agcaatttaaaaagaaatatatctatgtagtactacctactacataaaaataataattttggt 3193653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 363
Target Start/End: Complemental strand, 502931 - 502805
Alignment:
Q  234 ttttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaat 333  Q
    |||||| || ||||||||||||| ||||| |||||||||| |||| |||||||||  |||||||||||||  |||||||||| |||||||||||| ||||    
T  502931 tttttttttgcaaaagattcattcataatcaaagttctctaaaaatatattttcaatagaattaatcaaa--gagttaaaaagaaatatatctatataat 502834  T
Q  334 actaactactaagtaaaaataataattttg 363  Q
    ||||||| ||||||||||||||||||||||    
T  502833 actaact-ctaagtaaaaataataattttg 502805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 363
Target Start/End: Original strand, 16569252 - 16569429
Alignment:
Q  184 aatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatat 283  Q
    |||||||||||||||||  ||| |||||||  ||||| ||||||| ||||||||||  | ||| ||||| ||| ||| | || ||| ||| |||||||||    
T  16569252 aatcaataaagttgtaccgtttaaattattgcaatgtctttcttcttgcatttttt--tgcaatagatttatttatattcaaggttttctaaaaacatat 16569349  T
Q  284 tttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||  ||||||||  || |||||||||||| ||||||| |||| ||||| || |||||||||||||||||||||||||    
T  16569350 tttcaatagaattaacaaatgggagttaaaaagaaatatacctatataatattacctactaagtaaaaataataattttg 16569429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 363
Target Start/End: Complemental strand, 20870827 - 20870634
Alignment:
Q  164 aatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataata 263  Q
    ||||||||||| | | | |||| ||||||| |||||| ||||||||||||  ||| ||||| ||| ||||||||||||| || || ||||||| |||||     
T  20870827 aatttttagtgccctggacgaaacaataaa-ttgtaccattttaattattttaatattttt-ttcttgcattttttgttgcagaatattcatttataatc 20870730  T
Q  264 aaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||| ||| |||| ||||| |||  | ||||||||||||||| ||||||| |||||||| || |    |||||||||||| |||||||||||||||||    
T  20870729 aaagttatctaaaaatatattatcaataaaattaatcaaagggaattaaaaagaaatatatatagt----actaactactaaataaaaataataattttg 20870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 16570492 - 16570625
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatt 329  Q
    |||||||| |||  ||||||||| |||  |||| |||||||||| |||| ||||||| |  |||||||||||||| || ||||||| ||||||||||||     
T  16570492 tgcattttctgtggcaaaagattaatttttaatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctata 16570591  T
Q  330 taatactaactactaagtaaaaataataattttg 363  Q
    |  ||| ||||| |||||||||||||||||||||    
T  16570592 tggtaccaactaataagtaaaaataataattttg 16570625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 365
Target Start/End: Original strand, 12263642 - 12263779
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagtt--aaaaataaatatatcta 327  Q
    ||||| |||| || ||||||||||||  ||||| |||||||| | |||| |||||||||  |||||||||||||| || ||  ||||| ||| |||||||    
T  12263642 tgcatcttttattgcaaaagattcatctataatcaaagttctttaaaaatatattttcaatagaattaatcaaagcgaattaaaaaaaaaaaaatatcta 12263741  T
Q  328 tttaatactaactactaagtaaaaataataattttggt 365  Q
    | || ||||||| | |||||||||||||||||||||||    
T  12263742 tatagtactaaccattaagtaaaaataataattttggt 12263779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 363
Target Start/End: Complemental strand, 36161170 - 36161044
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaa 332  Q
    ||||||| |||||||||||||||| || || |||||| | ||||||||||||||||  | |||||||||||   | |||||   ||| |||||||| |||    
T  36161170 attttttattacaaaagattcattcatgatcaaagtt-ttttaaaacatattttcaatataattaatcaaaataatttaaa---aaaaatatctatataa 36161075  T
Q  333 tactaactactaagtaaaaataataattttg 363  Q
    || |||||||||  |||||||||||||||||    
T  36161074 tattaactactacataaaaataataattttg 36161044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 363
Target Start/End: Complemental strand, 39542615 - 39542410
Alignment:
Q  156 ggtcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcat 255  Q
    |||||||| |||||| ||| | || |||||| |||||| |||| |  ||||||||||  |||||| ||||||| |||||||||| ||  ||||| || ||    
T  39542615 ggtcttaatatttttggtgccctatgcgaattaataaaattgtgcccttttaattatatgaatgtctttcttcttgcattttttattgtaaaagttt-at 39542517  T
Q  256 tgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataa 355  Q
    | ||||| |||||||| | ||||||||||||||  | ||| ||| ||   |  ||||||| | ||||||  || || |||||||||||| ||||||||||    
T  39542516 tcataatcaaagttctttaaaaacatattttcaatataatcaataaacacgctttaaaaa-atatatattcatatagtactaactactacgtaaaaataa 39542418  T
Q  356 taattttg 363  Q
    ||||||||    
T  39542417 taattttg 39542410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 7887264 - 7887318
Alignment:
Q  311 aaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||||| ||| |||||||| || |||||||||||||||||||||||||||||||||    
T  7887264 aaaaagaaacatatctatatagtactaactactaagtaaaaataataattttggt 7887318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 324
Target Start/End: Original strand, 7886560 - 7886702
Alignment:
Q  180 ggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaac 279  Q
    |||||| ||||||| |||| | ||||||||||||| ||  ||||||||| | | ||||||||| ||||| ||||| | ||||| |||||| ||| || |     
T  7886560 ggcgaaacaataaa-ttgtgccattttaattattcaaacatttttcttcttac-ttttttgttccaaaatattcacttataatcaaagttatctaaacat 7886657  T
Q  280 atattttcataagaattaatcaaagggagttaaaaataaatatat 324  Q
    |||||||||  |||||||||||||| || ||||||| ||| ||||    
T  7886658 atattttcaatagaattaatcaaagcgaattaaaaagaaacatat 7886702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 362
Target Start/End: Complemental strand, 8934240 - 8934060
Alignment:
Q  183 gaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattt---tttgttacaaaagattcattgataataaaagttctcttaaaac 279  Q
    |||||||||||| | ||  ||||||||||||  ||| ||||||||| | |||||   ||||||||||| |||||||| ||||| ||   ||||| ||||     
T  8934240 gaatcaataaagatatatcattttaattatttaaatatttttcttcttacatttctttttgttacaaatgattcattcataattaagactctctaaaaat 8934141  T
Q  280 atattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    |||| ||||  | |||||||||||  |||||||||| |||||||| ||| | | |||||||| ||| || |||||||||||||    
T  8934140 atatcttcaatataattaatcaaaatgagttaaaaa-aaatatatatatgt-acactaactattaaatataaataataatttt 8934060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 363
Target Start/End: Original strand, 3596911 - 3597041
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaa 332  Q
    ||||||| || ||||||||||| | ||| | ||| || | | |||| ||||||| |  |||||||||||||  || ||||||| |||||||||    |||    
T  3596911 attttttttttcaaaagattcacttatattcaaatttttataaaaatatatttttaatagaattaatcaaaacgaattaaaaagaaatatatcacaataa 3597010  T
Q  333 tactaactactaagtaaaaataataattttg 363  Q
    |||||| |||||| |||||||||||||||||    
T  3597011 tactaattactaaataaaaataataattttg 3597041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 10325717 - 10325763
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||| ||| || ||||||| |||||||||||||||||||||||||    
T  10325717 atatatatatatagtactaacaactaagtaaaaataataattttggt 10325763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 165 - 365
Target Start/End: Complemental strand, 12174518 - 12174318
Alignment:
Q  165 atttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataa 264  Q
    |||||| ||||| | | |||| ||||||| ||||  | ||||| |||||  ||| |||| |||| |||| |||||||||||||||||||||| | ||| |    
T  12174518 atttttggtgtcatggacgaaacaataaaattgtgttgttttatttatttcaatattttccttcttgcagtttttgttacaaaagattcatttacaatta 12174419  T
Q  265 aagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttgg 364  Q
    ||||||||| |||| ||||||| |  | |||||||||||  || ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||    
T  12174418 aagttctctaaaaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttgg 12174319  T
Q  365 t 365  Q
    |    
T  12174318 t 12174318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 365
Target Start/End: Original strand, 9815619 - 9815803
Alignment:
Q  180 ggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaac 279  Q
    |||||| ||||||| |||| |  |||||||||||| ||| || |||||| ||||||||||||||||||| | ||||| ||||| | |||| ||| ||||     
T  9815619 ggcgaaacaataaaattgtgcccttttaattattctaatattattcttcttgcattttttgttacaaaa-actcatttataatcatagttttctaaaaat 9815717  T
Q  280 atattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||  | | |||||||||| || ||||||| |||||||||||| || || ||||||||||||||||||||||||||||||    
T  9815718 atattttcaataaagttaatcaaagcgaattaaaaagaaatatatctatatagtattaactactaagtaaaaataataattttggt 9815803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 182 - 363
Target Start/End: Complemental strand, 31787993 - 31787815
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    |||| ||||||| ||||||  |||||||||||  ||| |||||  || ||||||||| ||| ||||| ||||||| ||||| |||||| |||  ||| ||    
T  31787993 cgaaacaataaa-ttgtacctttttaattatttcaatattttt--tcttgcatttttagttgcaaaatattcatttataattaaagttatctacaaatat 31787897  T
Q  282 attttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||||  |||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  31787896 attttcaatagaattaatcaaagcgaattaaaaataaatatatctacttaatactaactattaagtacaaataataattttg 31787815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 35121917 - 35122082
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| |||||||||  |||||||| ||| ||||| ||||||| ||||| |||||| ||| |||| |||||||||  ||||||||||||    
T  35121917 ttttaattattcaaatatttttcttctagcattttt-gttgcaaaatattcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaa 35122015  T
Q  303 agggagttaaaaataaatatatctattta-ata---ctaactactaagtaaaaataataattttggt 365  Q
    || || ||||| ||| |||||| ||| || |||    ||||||||||||||||||||||||||||||    
T  35122016 agcgaattaaatatatatatatatatatatatatatataactactaagtaaaaataataattttggt 35122082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 366
Target Start/End: Original strand, 34573110 - 34573320
Alignment:
Q  156 ggtcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcat 255  Q
    |||||||| ||||||  |||| ||| | || ||||||| |||| |  ||| || ||||| ||| ||||||||  |||||| ||| |||  ||||||||||    
T  34573110 ggtcttaagatttttgatgtcctagacaaaacaataaaattgtgccctttaaaatattcaaatatttttctttttgcattctttttta--aaagattcat 34573207  T
Q  256 tgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatat--ctatttaatactaactactaagtaaaaat 353  Q
    | ||||| |||||||| | |||| |||||||||  | |||||||||||  || ||||||| ||||||||  |||| ||||| |||||||||| |||||||    
T  34573208 ttataatcaaagttctttaaaaatatattttcaataaaattaatcaaaccgaattaaaaagaaatatatatctatataatattaactactaaataaaaat 34573307  T
Q  354 aataattttggta 366  Q
    |||||||||||||    
T  34573308 aataattttggta 34573320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 362
Target Start/End: Original strand, 34540829 - 34540988
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||| ||| |||||| ||||||| || |||||||||| ||||| ||| ||| ||||| ||  || | | |||| |||||||||  |||| |||||||    
T  34540829 ttttaatcatttgaatgtatttcttcatgtattttttgttgcaaaaaatttattcataatcaagattatttaaaaatatattttcaatagaactaatcaa 34540928  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    |  ||||||| || |||||||||||| || || ||| |||||||||||||||||||||||    
T  34540929 aacgagttaataagaaatatatctatatagtattaattactaagtaaaaataataatttt 34540988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 10668850 - 10669009
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||  || |||||||||  ||| ||||||||| ||||| || ||| ||| |||| |||||||||  | ||||||||||    
T  10668850 ttttaattattctaatatttttctttttggattttttgtctcaatagattcatttataatcaacgtt-tctaaaaa-atattttcaatataattaatcaa 10668947  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    | | | || |||| | |||||||||| |||||||||||| |||||||||||||||||||||||    
T  10668948 atgaa-ttcaaaagatatatatctatataatactaactaataagtaaaaataataattttggt 10669009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 33344981 - 33344880
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| |||||||||  |||||||||||| ||||| ||||||| ||||| |||||| ||| |||| |||||||||  ||||||||||||    
T  33344981 ttttaattattcaaatatttttcttctagcattttttgttgcaaaatattcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaa 33344882  T
Q  303 ag 304  Q
    ||    
T  33344881 ag 33344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 34329792 - 34329893
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||| ||||||||||||| ||||||||  ||| ||||  |||||||||| |||| |||||||||  ||||||||||||    
T  34329792 ttttaattattctaatatttttcttcttgcattttttgttgcaaaagatctatttataagcaaagttctctaaaaatatattttcaatagaattaatcaa 34329891  T
Q  303 ag 304  Q
    ||    
T  34329892 ag 34329893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 342
Target Start/End: Original strand, 31153606 - 31153745
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||||||| || |||||||  || |||||||||| || ||||||||||||| || || |||||| | | ||||||||||||||  | ||||||| ||    
T  31153606 ttttaattatttgagtgttttttctcttgcattttttattgcaaaagattcattcatgatcaaagttatttaaaaacatattttcaatataattaattaa 31153705  T
Q  303 agggagttaaaaataaatatatctatttaatactaactac 342  Q
    | ||| |||||| ||||||||||||| || |||| |||||    
T  31153706 aaggatttaaaattaaatatatctatatagtactgactac 31153745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 365
Target Start/End: Original strand, 33607007 - 33607192
Alignment:
Q  183 gaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataa-taa--aagttctcttaaaac 279  Q
    ||||| ||||| |||| || |||||||||||| ||| |||||||||||  || ||| ||| |||||| |||||| |||| |||  ||| | | ||||||     
T  33607007 gaatcgataaacttgttctcttttaattattcaaatatttttcttcgtatatctttagttgcaaaaggttcattcataactaattaaggttttttaaaaa 33607106  T
Q  280 atattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||  |||||||||||||  ||||| ||||||||  ||| ||| || || |||||| ||| |||||||||||||||||||    
T  33607107 atattttcaatagaattaatcaaaatgagttgaaaataaaattatgtatatactattaactattaaataaaaataataattttggt 33607192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 34969450 - 34969396
Alignment:
Q  309 ttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  34969450 ttaaaaataaatatatctatatagtaccaactactaagtaaaaataataattttg 34969396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 6274014 - 6274062
Alignment:
Q  317 aaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  6274014 aaatatatgtatataatactaactactaagttaaaataataattttggt 6274062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 35067207 - 35067103
Alignment:
Q  158 tcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattg 257  Q
    |||||| |||||| | ||||| |||||||||||||| || |  ||||||||||||| |||| | ||| ||| | |||||||| || || ||||||||||     
T  35067207 tcttaagatttttggcgtctttggcgaatcaataaaattatgttattttaattatttgaatatcttttttcttacattttttcttgcataagattcattc 35067108  T
Q  258 ataat 262  Q
    |||||    
T  35067107 ataat 35067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 4337976 - 4338022
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||| ||| || ||||||||||||||||||| |||||||||||||    
T  4337976 atatatatatatagtactaactactaagtaaaagtaataattttggt 4338022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 18991742 - 18991808
Alignment:
Q  202 attttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagt 268  Q
    ||||||| ||||  ||| ||||||||| ||||||||||||| || |||||||||| ||||| |||||    
T  18991742 attttaactatttcaatatttttcttcttgcattttttgttgcacaagattcatttataattaaagt 18991808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 33344823 - 33344794
Alignment:
Q  336 taactactaagtaaaaataataattttggt 365  Q
    ||||||||||||||||||||||||||||||    
T  33344823 taactactaagtaaaaataataattttggt 33344794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 34969920 - 34969848
Alignment:
Q  210 tattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatat 283  Q
    ||||| ||| ||||||||| |||||||||||||  |||||||||||| ||| | |||||| |||||||| ||||    
T  34969920 tattccaatatttttcttcttgcattttttgttgtaaaagattcatttatagtcaaagtt-tcttaaaaaatat 34969848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 13580327 - 13580489
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| |||||  || ||||||||||||| ||||| ||||||| ||||  |||||| | | |||| |||||||||  ||||||||||||    
T  13580327 ttttaattattctaatattttttgtcttgcattttttgttgcaaaatattcatttataaccaaagttatttaaaaatatattttcaatagaattaatcaa 13580426  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    || || ||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  13580427 agcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattttggt 13580489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 13236343 - 13236221
Alignment:
Q  202 attttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatca 301  Q
    ||||||||||||| ||| ||||||||| |||||| |||||| ||||| |||| || ||||| |||||||||| |||| |||||||||| |||||||||||    
T  13236343 attttaattattccaatatttttcttcttgcattatttgttgcaaaaaattcgtttataatcaaagttctctaaaaatatattttcattagaattaatca 13236244  T
Q  302 aagggagttaaaaataaatatat 324  Q
    ||| || ||||||| ||||||||    
T  13236243 aagcgaattaaaaagaaatatat 13236221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 365
Target Start/End: Original strand, 26835593 - 26835725
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaa 332  Q
    |||||||||| || |||||||||| ||||| |||||||||| |||| |||||||||  ||||||||| ||||  | ||||||| |||||||| ||| |      
T  26835593 attttttgttgcacaagattcatttataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaagaaatatatttatattg 26835692  T
Q  333 tactaactactaagtaaaaataataattttggt 365  Q
    ||||||||| |||||||||||||||||||||||    
T  26835693 tactaactattaagtaaaaataataattttggt 26835725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 363
Target Start/End: Complemental strand, 9191351 - 9191200
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||  ||| ||||||||   ||||| ||||||  |||||||||||| ||||| | |||||||| |||| ||||||| |  ||||||||||||    
T  9191351 ttttaattatttcaatatttttctt---gcattatttgttgtaaaagattcatttataatcatagttctctaaaaatatattttgaatagaattaatcaa 9191255  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    || || ||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  9191254 agtgaattaaaaataaatatatctat------ataactactaagtaaaaataataattttg 9191200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 22930439 - 22930319
Alignment:
Q  245 aaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactacta 344  Q
    |||| ||||||| ||||| |||||| ||| |||| || ||||||  |||||||||||||| || ||||||| | |||||||||| || ||||||||| ||    
T  22930439 aaaatattcatttataatcaaagttatctaaaaatattttttcaatagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactatta 22930340  T
Q  345 agtaaaaataataattttggt 365  Q
    ||||||||| |||||||||||    
T  22930339 agtaaaaattataattttggt 22930319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 363
Target Start/End: Complemental strand, 31383655 - 31383474
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    |||||||||||||||||||   || ||||||||||| || |||  |  || |||||| ||| ||||||||||||| ||| | ||||||  || ||| |||    
T  31383655 cgaatcaataaagttgtacctcttaaattattcgaacgtattttgttatgtatttttcgttgcaaaagattcattcatattcaaagttagctaaaaccat 31383556  T
Q  282 attttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||||  | ||||||| ||||| | |||||||||| ||||  ||| ||||| |||||| |||| ||||||||||||||||    
T  31383555 attttcaataaaattaattaaaggaaattaaaaataattatacttatataatattaactattaagaaaaaataataattttg 31383474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 34142123 - 34142022
Alignment:
Q  264 aaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||| ||| |||| |||||||||  |||||||||||||| |  ||||||| |||||||||||| || ||||||||||||| ||||||||||| |||||    
T  34142123 aaagttatctgaaaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatctatatagtactaactactaaataaaaataatagttttg 34142024  T
Q  364 gt 365  Q
    ||    
T  34142023 gt 34142022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 365
Target Start/End: Original strand, 4350596 - 4350802
Alignment:
Q  165 atttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgata---- 260  Q
    |||||| ||||| | | |||| ||||||| ||||||  |||||||||||  ||| ||||| ||| |||||||||||||  |||| |||| || |||        
T  4350596 atttttcgtgtcctggacgaaacaataaa-ttgtacccttttaattattttaatattttttttcttgcattttttgttgaaaaatattcgtttatatata 4350694  T
Q  261 ataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaata---tatctatttaatactaactactaagtaaaaataata 357  Q
    || |||||| | | |||| |||||||||  |||||||| ||||| || ||||||| |||||   ||||||| |||||||||||||||| |||||||||||    
T  4350695 atcaaagttatataaaaatatattttcaatagaattaaccaaagcgaattaaaaaaaaataatatatctatataatactaactactaaataaaaataata 4350794  T
Q  358 attttggt 365  Q
    ||||||||    
T  4350795 attttggt 4350802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 31278064 - 31277936
Alignment:
Q  188 aataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaa-acatatttt 286  Q
    ||||||||||| | ||||| ||||||||||| | ||||||| || |||||| | | ||||||||||||| ||||| || ||||||| ||| | |||||||    
T  31278064 aataaagttgtgccatttttattattcgaatctctttcttcttgaatttttaggtgcaaaagattcatttataatcaaggttctctaaaataaatatttt 31277965  T
Q  287 cataagaattaatcaaagggagttaaaaa 315  Q
    ||  |||||||||||||| ||||||||||    
T  31277964 caatagaattaatcaaagtgagttaaaaa 31277936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 366
Target Start/End: Original strand, 22486608 - 22486727
Alignment:
Q  247 aagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaag 346  Q
    |||||||||| ||||| |||||||||| |||  |||||||||  |||||||||||||   | ||||||| ||| ||||||||||  || | |||||||||    
T  22486608 aagattcatttataatcaaagttctctaaaatgatattttcaatagaattaatcaaaacaaattaaaaagaaacatatctattttgtagtgactactaag 22486707  T
Q  347 taaaaataataattttggta 366  Q
    ||| ||||||||||||||||    
T  22486708 taagaataataattttggta 22486727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 28376725 - 28376655
Alignment:
Q  295 ttaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||  || ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||    
T  28376725 ttaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggt 28376655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 288
Target Start/End: Complemental strand, 24606969 - 24606847
Alignment:
Q  165 atttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataa 264  Q
    |||||| |||||||||||||||||| ||||||||    ||||| |||||  ||||| ||||||| | ||||||||| | ||||||||||||| ||||  |    
T  24606969 atttttggtgtcttaggcgaatcaacaaagttgtgtccttttagttatttaaatgtctttcttcttacattttttgctgcaaaagattcatttataaata 24606870  T
Q  265 aagttctcttaaaacatattttca 288  Q
    ||||||| |||||| |||||||||    
T  24606869 aagttct-ttaaaaaatattttca 24606847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 43872667 - 43872544
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||  || |||||||||| || |||||||||| ||||| |||||||| | |||| |||||| ||  ||||||||| ||    
T  43872667 ttttaattattctaatatttttctttttgtattttttgttgcacaagattcatttataatcaaagttctttaaaaatatatttacaatagaattaatgaa 43872568  T
Q  303 agggagttaaaaataaatatatct 326  Q
    ||  | |||| || ||||||||||    
T  43872567 agcaaattaagaagaaatatatct 43872544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 41849562 - 41849429
Alignment:
Q  181 gcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaaca 280  Q
    |||||||| |||||||||  ||||||||||||| |||||| ||||||  ||  |||||||||  |||||||||||| ||||| ||  |||| | |||| |    
T  41849562 gcgaatcagtaaagttgtgttattttaattatttgaatgtctttctttttg-tttttttgttgaaaaagattcattaataatcaagattctttaaaaata 41849464  T
Q  281 tattttcataagaattaatcaaagggagttaaaaa 315  Q
    ||||||||  |||||||||||| |  |||||||||    
T  41849463 tattttcaatagaattaatcaatgcaagttaaaaa 41849429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 12181872 - 12181824
Alignment:
Q  314 aataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  12181872 aataaatatttctatataatactaattactaagtaaaaataataatttt 12181824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 12426300 - 12426252
Alignment:
Q  314 aataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  12426300 aataaatatttctatataatactaattactaagtaaaaataataatttt 12426252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 39295475 - 39295586
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||||||||| ||||||| || | |||||||| ||||| || ||||  |||| || ||| ||| ||||  ||||||||  ||||| ||||||    
T  39295475 ttttaattattcgaatgtgtttcttcatgtaatttttgttgcaaaaaatccatttgtaat-aaggttttctaaaaatgtattttcaatagaatcaatcaa 39295573  T
Q  303 agggagttaaaaa 315  Q
    || ||||||||||    
T  39295574 agtgagttaaaaa 39295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 21348439 - 21348481
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattt 361  Q
    |||||| ||| |||||||||||||||||||||||||| |||||    
T  21348439 atatatatatataatactaactactaagtaaaaataagaattt 21348481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 26802011 - 26801891
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||||||| |||||||||||||  |  |||||||||| |||| || || || ||||| || ||||||| | || ||| |||||  | ||||||||||    
T  26802011 ttttaattatttgaatgtttttcttattaaattttttgttgcaaaggactcgtttataatcaatgttctctaataatata-tttcaatataattaatcaa 26801913  T
Q  303 agggagttaaaaataaatatat 324  Q
    || |||||||||  ||||||||    
T  26801912 agtgagttaaaacaaaatatat 26801891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 203 - 365
Target Start/End: Complemental strand, 23870206 - 23870045
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||  ||| ||||| ||| ||| ||||||||| ||||| ||||||| ||||| |||||| ||| |||| |||||||||  ||||||||||||    
T  23870206 ttttaattattacaattttttt-ttcttgctttttttgttgcaaaatattcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaa 23870108  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |  || ||||||| | |||||||||| || |||||||||||||||||||||||||||||||||    
T  23870107 aacgaattaaaaaaatatatatctatatagtactaactactaagtaaaaataataattttggt 23870045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 365
Target Start/End: Complemental strand, 2113999 - 2113837
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||||||| |||||| ||||||| || ||||||| || ||||||||| ||| ||||| || ||||| | ||||||||||||||  | ||||||||||    
T  2113999 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 2113900  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||  | ||| ||| |||||||||||| || ||||||||||||  |||| ||||||||||||||    
T  2113899 agcaatttagaaagaaatatatctatgtagtactaactactacataaagataataattttggt 2113837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 362
Target Start/End: Original strand, 36071557 - 36071685
Alignment:
Q  234 ttttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaat 333  Q
    ||||||||| || |||||||||| ||||| |||||||||| |||| |||||||||   |||||||||||||  | ||||||| |||||||||||| || |    
T  36071557 ttttttgttgcataagattcatttataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaagaaatatatctatatagt 36071656  T
Q  334 actaactactaagtaaaaataataatttt 362  Q
    ||||||||  |||||||||||||||||||    
T  36071657 actaactatcaagtaaaaataataatttt 36071685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 362
Target Start/End: Complemental strand, 12320580 - 12320404
Alignment:
Q  187 caataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatatttt 286  Q
    ||||||| |||| || |||||||||||| |||  |||||||| | ||||||||||| ||||| ||||||| |||||  ||||| | | |||| ||||| |    
T  12320580 caataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttataatcgaagttttttaaaaaaatattct 12320481  T
Q  287 cataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaa-taataatttt 362  Q
    ||  | |||||||||||  || ||||||| | |||||||||| | ||||||||||||||||||||| ||||||||||    
T  12320480 caatataattaatcaaaccgaattaaaaagatatatatctatattatactaactactaagtaaaaagtaataatttt 12320404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 7102289 - 7102144
Alignment:
Q  216 aatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaa 315  Q
    ||||||||||||| || | |||||||| || |||||||||| |||||||||||||||| ||||  ||||||||  || ||||||||||   | |||||||    
T  7102289 aatgtttttcttcttgtactttttgttgcacaagattcatttataataaaagttctctaaaaatgtattttcaataggattaatcaaaacaaattaaaaa 7102190  T
Q  316 taaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
     |||||||||||| ||||||||||| |  | ||||||||||||||||    
T  7102189 -aaatatatctatataatactaactgccgactaaaaataataatttt 7102144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 363
Target Start/End: Original strand, 3643092 - 3643273
Alignment:
Q  181 gcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaaca 280  Q
    ||||| ||||||| ||||   ||||||||||||| ||| ||||||||| || |||||||||| || || ||||||| || || |||| ||| | |||| |    
T  3643092 gcgaaacaataaaattgtgtcattttaattattccaatatttttcttcttggattttttgttgcacaaaattcatttattatcaaagctctttaaaaata 3643191  T
Q  281 tattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
      ||||||  | |||||||||| |  | ||||||| |||||||||||| || ||||||||||||||| |||||||||||||||    
T  3643192 acttttcaatataattaatcaatgcaaattaaaaagaaatatatctatatagtactaactactaagt-aaaataataattttg 3643273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 365
Target Start/End: Complemental strand, 29118603 - 29118469
Alignment:
Q  232 cattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagtt-aaaaataaatatatctattt 330  Q
    |||||||| || ||||| ||||||| ||||| |||||||| | ||||||||||||||  | ||||||| ||| | | || ||||| |||||||||||| |    
T  29118603 cattttttattgcaaaatattcattcataatcaaagttctttaaaaacatattttcaatataattaattaaaagcaatttaaaaagaaatatatctatgt 29118504  T
Q  331 aatactaactactaagtaaaaataataattttggt 365  Q
    | ||||||||||||  |||||||||||||||||||    
T  29118503 agtactaactactacataaaaataataattttggt 29118469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 365
Target Start/End: Complemental strand, 7853475 - 7853293
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    |||| ||||||| ||||||  |||||||||||  |||  |||||||| | |||||||  || ||||  ||||||| ||||| |||||| ||| |||| ||    
T  7853475 cgaaacaataaaattgtacccttttaattatttcaatagttttcttcttacattttta-ttgcaaagaattcatttataatcaaagttttctaaaaatat 7853377  T
Q  282 attttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||  |  ||||||||||  || ||||||  | |||||||||| || |||||||||||||||||||||||||| ||||||    
T  7853376 attttcaatatcattaatcaaactgaattaaaaggatatatatctatatagtactaactactaagtaaaaataataaatttggt 7853293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 361
Target Start/End: Original strand, 35372063 - 35372230
Alignment:
Q  187 caataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatatttt 286  Q
    |||||||||||| | ||||||| ||||| ||| ||||||||| | ||||||||||| ||  |||||| || ||||| |||| ||||| |||| |||||||    
T  35372063 caataaagttgtgccattttaaatattctaatatttttcttcttacattttttgttgcatgagattcgtttataattaaagctctctaaaaatatatttt 35372162  T
Q  287 cataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattt 361  Q
    ||  | |||||||||||  || ||||||| |||||||      || | |||||||||||||||||||||||||||    
T  35372163 caatataattaatcaaactgaattaaaaa-aaatata------tagtcctaactactaagtaaaaataataattt 35372230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 4596455 - 4596588
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatt 329  Q
    ||||||||||||| ||||||||||||| ||||| || ||| |  ||  | |||||||||  | ||| |||||||| || ||||||| |||||||| |||     
T  4596455 tgcattttttgttgcaaaagattcattcataatcaaggtttttctagtatatattttcaataaaatcaatcaaagtgaattaaaaacaaatatatatata 4596554  T
Q  330 taatactaactactaagtaaaaataataattttg 363  Q
    || ||||||| ||||| |||||||||||||||||    
T  4596555 tattactaacaactaaataaaaataataattttg 4596588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 365
Target Start/End: Complemental strand, 5627651 - 5627494
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||  ||||||||||||| ||||| ||||||| ||||| | |||| | | ||||||| ||||||  | ||||||||||    
T  5627651 ttttaattattcaaatatttttcttattgcattttttgttgcaaaatattcatttataatcagagttatataaaaacattttttcaatataattaatcaa 5627552  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |  || |||||||  ||||||| |||    |||||||||| | ||||||||||||||||||||    
T  5627551 aacgaattaaaaa-gaatatatatat----tactaactaccatgtaaaaataataattttggt 5627494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 357
Target Start/End: Original strand, 43515787 - 43515980
Alignment:
Q  165 atttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcatttttt-gttacaaaagattcattgataata 263  Q
    |||||| ||||| | |||||| ||||||| |||| |  ||||| |||||| |||  |||||||| | |||||||| ||| ||||||||||||| |||||     
T  43515787 atttttggtgtcctgggcgaaacaataaaattgtgcccttttagttattctaatagttttcttcttacatttttttgttgcaaaagattcatttataatc 43515886  T
Q  264 aaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataata 357  Q
    |||||| ||| | || ||||| | |  | |||||||||||   | ||||||| | |||||||||| |||||||||||| |||||||||| ||||    
T  43515887 aaagttttctaacaatatattcttaatataattaatcaaaccaaattaaaaagatatatatctatataatactaactaataagtaaaaaaaata 43515980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 48653828 - 48653742
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcat 289  Q
    |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||| ||||| ||  |||||| | || ||||||||||    
T  48653828 ttttaattattcgaatgtctttcttcttgcatgttttgttgcaaaagattcattcataattaagattctctaagaaaatattttcat 48653742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 363
Target Start/End: Complemental strand, 53178926 - 53178749
Alignment:
Q  184 aatcaataaagttgtactattttaattattcgaatgtttttcttcgtgca-ttttttgttacaaaagattcattgataataaaagttctcttaaaacata 282  Q
    |||||||||||||||  |||||||||||||  ||||| ||||||   | | ||||||||| ||||| ||||||| ||||| |||||||  | |||| |||    
T  53178926 aatcaataaagttgtgttattttaattatttaaatgtctttcttatggtatttttttgttgcaaaa-attcattcataatcaaagttcgttaaaaatata 53178828  T
Q  283 ttttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
      ||||  | ||||||||||||  ||||||||  |||||||| ||| |||||||||||||||| |||| | ||||||||||    
T  53178827 cattcaataaaattaatcaaagtaagttaaaa--aaatatatttatataatactaactactaaataaataaaataattttg 53178749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 365
Target Start/End: Original strand, 25779590 - 25779773
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    ||||||||||||||||    ||| |||||||| |||| | || |||  |||||| |||||| || |||||||||| ||||| |||||| |||  ||| ||    
T  25779590 cgaatcaataaagttgcgtcattctaattatttgaatatcttcctttttgcattctttgttgcagaagattcattcataatcaaagttttctacaaatat 25779689  T
Q  282 attttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||||| |  | |||||||||||   || |||||| |||||||| |   |  ||||||||| |||||||||||||||||||||||    
T  25779690 atttttaacaaaattaatcaaaaaaaggtaaaaagaaatatatgtgcatcgtactaactaataagtaaaaataataattttggt 25779773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 8732999 - 8733093
Alignment:
Q  158 tcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagatt 252  Q
    |||||||  |||| ||||| ||||||||  |||||||||||   ||||| ||||||| |||||||||||||  |||||||||||| |||||||||    
T  8732999 tcttaaatcttttggtgtcctaggcgaacaaataaagttgtggcatttttattattcaaatgtttttcttctagcattttttgttgcaaaagatt 8733093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 363
Target Start/End: Original strand, 15986881 - 15986999
Alignment:
Q  245 aaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactacta 344  Q
    |||||||||||| || || || ||||| | |||  |||||||||  |||||||||||||     |||||||||||||||||||| || ||||||||||||    
T  15986881 aaaagattcattcatgattaaggttctttaaaattatattttcaatagaattaatcaaaacacattaaaaataaatatatctatatagtactaactacta 15986980  T
Q  345 agtaaaaataataattttg 363  Q
    | |||| |||| |||||||    
T  15986981 attaaagataacaattttg 15986999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 47059745 - 47059688
Alignment:
Q  308 gttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggt 47059688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 47082057 - 47082114
Alignment:
Q  308 gttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggt 47082114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 12167121 - 12167050
Alignment:
Q  292 gaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||||| |||  |||||||||||||||| || ||| || |||||| ||||||| ||||||||||||||||    
T  12167121 gaattaataaaattgagttaaaaataaatacatatatatactactaattactaagcaaaaataataattttg 12167050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 20811475 - 20811597
Alignment:
Q  202 attttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatca 301  Q
    |||||||||||||||||||||| |||| | ||||||| ||| |||||  |||| | ||||| ||| |||| | |||| |||||||||  | || |||| |    
T  20811475 attttaattattcgaatgttttgcttctttcatttttcgttgcaaaaacttcactcataatcaaaattctttaaaaatatattttcaatataaataatta 20811574  T
Q  302 aagggagttaaaaataaatatat 324  Q
    |||  ||||||||| ||||||||    
T  20811575 aagcaagttaaaaacaaatatat 20811597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 37226444 - 37226342
Alignment:
Q  153 gttggtcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagatt 252  Q
    ||||||||||| || ||| ||||||| | |||||||||||| | ||  | ||||||||||| |||||| ||| ||  | ||||||||||| |||||||||    
T  37226444 gttggtcttaagatctttggtgtcttggacgaatcaataaaatcgtgttcttttaattatttgaatgtcttttttatttcattttttgttgcaaaagatt 37226345  T
Q  253 cat 255  Q
    |||    
T  37226344 cat 37226342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 40807927 - 40807977
Alignment:
Q  291 agaattaatcaaagggagttaaaaataaatatatctatttaatactaacta 341  Q
    |||||||||||||| || ||||||| |||||||||||| ||||||||||||    
T  40807927 agaattaatcaaagcgaattaaaaagaaatatatctatataatactaacta 40807977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 38087703 - 38087657
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||| |  ||||||||| |||||||||||||||||||||||    
T  38087703 atatatctatattgtactaactattaagtaaaaataataattttggt 38087657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 55147883 - 55147957
Alignment:
Q  291 agaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||||||   | ||||||| |||||||||||| |  || | |||| |||||||||||||||||||||||    
T  55147883 agaattaatcaaaacaaattaaaaagaaatatatctatgttgtagtgactattaagtaaaaataataattttggt 55147957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 40807842 - 40807914
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||||  | |||||||||| ||||| || ||| ||| |||||||||||| |  ||||||||||||    
T  40807842 tgcattttttgttggataagattcattcataatcaatgttatctaaaaacatatttttaatagaattaatcaa 40807914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 51002624 - 51002700
Alignment:
Q  180 ggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcatt 256  Q
    ||||||| |||||| |||| |  |||||||||||| ||||| ||||||| | |||||||| |  |||||||||||||    
T  51002624 ggcgaataaataaacttgttcctttttaattattcaaatgtctttcttcttacattttttatcgcaaaagattcatt 51002700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 55147639 - 55147739
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| |||||| |  |  ||||||||||  | |||||||||| ||||| |||||||||| |||| | |||||||  | ||||||||||    
T  55147639 ttttaattattctaatatttttcatattctattttttgttgtacaagattcatttataatcaaagttctctaaaaagacattttcaataaaattaatcaa 55147738  T
Q  303 a 303  Q
    |    
T  55147739 a 55147739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 363
Target Start/End: Original strand, 33510096 - 33510226
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaa 332  Q
    |||||||||| ||||||||||||| ||||| |||||||||| |||| |||||||||   ||||||||||||  || ||||||| |||||||||||| ||     
T  33510096 attttttgttgcaaaagattcatttataattaaagttctctaaaaatatattttcaatggaattaatcaaaacgaattaaaaagaaatatatctatgtag 33510195  T
Q  333 tactaactactaagtaaaaataataattttg 363  Q
     ||||||||||||||||||||||||||||||    
T  33510196 cactaactactaagtaaaaataataattttg 33510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 182 - 352
Target Start/End: Original strand, 33682610 - 33682780
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    ||||||||||||||||| |  |||||||| ||||||||| |||||||  |||||| |||||||||||||||| || ||| | || ||||| | |||| ||    
T  33682610 cgaatcaataaagttgtgcccttttaatttttcgaatgtctttcttctagcatttgttgttacaaaagattcctttatagtcaaggttctttaaaaaaat 33682709  T
Q  282 attttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaa 352  Q
    ||||| |  |||||||||||||| || ||||||| |||||||||||| || ||||||||| ||||||||||    
T  33682710 atttttaatagaattaatcaaagtgaattaaaaagaaatatatctatctagtactaactattaagtaaaaa 33682780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 182 - 365
Target Start/End: Original strand, 168635 - 168814
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    |||||||||||||||| | |  ||||||||||| ||| | ||||||  ||||||||||||||||||||||||||| ||||| || |||||| ||||| ||    
T  168635 cgaatcaataaagttgca-tcctttaattattctaatttctttcttgttgcattttttgttacaaaagattcattcataatcaaggttctc-taaaatat 168732  T
Q  282 attttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||  ||||||||||| || ||||||||||| ||||||| ||| || | || |||||||||| |||||||||||| ||||    
T  168733 attttcaatagaattaatcacagcgagttaaaaat-aatatatttatatagtgctgactactaagt-aaaataataattatggt 168814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 15671078 - 15670919
Alignment:
Q  200 ctattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaat 299  Q
    ||||||||||||||| ||| ||||||||   | || ||||||| || |||||||||| ||||| |||||| ||| |||| |||||||||  |||||||||    
T  15671078 ctattttaattattctaatatttttctt---gtatattttgttgcacaagattcatttataatcaaagttttctaaaaagatattttcaatagaattaat 15670982  T
Q  300 caaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    ||||   | ||||||| |||||||||||| |  || |||||||||||||||||||||||||||    
T  15670981 caaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataatttt 15670919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 363
Target Start/End: Original strand, 54417030 - 54417151
Alignment:
Q  242 tacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaacta 341  Q
    ||||||||||||||| ||||| ||| |||| | ||||||||||||||  |||||||||||||| || ||||||  |||| ||||||| ||  ||||||||    
T  54417030 tacaaaagattcatttataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaaggaaatgtatctatatagcactaacta 54417129  T
Q  342 ctaagtaaaaataataattttg 363  Q
    | ||||||||||||||||||||    
T  54417130 ccaagtaaaaataataattttg 54417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 8266563 - 8266726
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaatt-aatca 301  Q
    |||||||||||  ||||| | ||||  || ||||||||||  ||||| |||||| ||||| || ||||||| ||||||||||||||  ||| || |||||    
T  8266563 ttttaattatttaaatgtctctctttttgtattttttgttgtaaaaggttcattaataatcaaggttctctgaaaacatattttcagtagagtttaatca 8266662  T
Q  302 aagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||  |||||||||  ||||||| |||| |||||||||||| || |||||||| |||||||||||    
T  8266663 aacagagttaaaagaaaatatacctatataatactaactattacgtaaaaatcataattttggt 8266726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 365
Target Start/End: Complemental strand, 11383726 - 11383589
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaa--aaataaatatatcta 327  Q
    ||||||||||||| ||||| ||||||| ||||| |||||| ||| |||| || ||||||   ||||||||||||| || ||||  | ||| |||||| ||    
T  11383726 tgcattttttgttgcaaaatattcatttataatcaaagttatctaaaaatattttttcaattgaattaatcaaagcgaattaaagatatatatatatata 11383627  T
Q  328 tttaatactaactactaagtaaaaataataattttggt 365  Q
    | || ||||||||||||| |||||||||||||||||||    
T  11383626 tatattactaactactaaataaaaataataattttggt 11383589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 27538709 - 27538881
Alignment:
Q  156 ggtcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcat 255  Q
    |||| ||| |||||| ||||||| |  ||| ||||||| |||||| ||||||| ||||  ||| ||||| ||| || |||||||||| ||||| ||||||    
T  27538709 ggtcctaagatttttggtgtcttggatgaaacaataaa-ttgtaccattttaactatttcaatattttt-ttcttgtattttttgttgcaaaatattcat 27538806  T
Q  256 tgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctattt 330  Q
    |  |||| |||||| | | |||| |||||||||  |||||||||||||| || ||||||||||||||||||||||    
T  27538807 ttctaatcaaagttatttaaaaatatattttcaatagaattaatcaaagagaattaaaaataaatatatctattt 27538881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 365
Target Start/End: Complemental strand, 2758258 - 2758073
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttg---ttacaaaagattcattgataataaaagttctcttaaaa 278  Q
    |||||||||||||||||  | ||||||||||| ||||||||||||| ||   ||||||    ||  |||||||||||| ||||  || ||| | | ||||    
T  2758258 cgaatcaataaagttgtgatcttttaattatttgaatgtttttctt-gtatttttttttctttttaaaaagattcattcataaccaaggttatgtaaaaa 2758160  T
Q  279 catattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
     |||| ||||| |||| ||||||||   ||||||||| |||||| | ||| || ||||||||||||| |||||||||||||||||||    
T  2758159 tatatattcattagaaataatcaaaactagttaaaaagaaatatgtttatatagtactaactactaattaaaaataataattttggt 2758073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 11365207 - 11365106
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||| ||||||||||||| ||||| ||||||| ||||| |||||| | | |||| || ||||||   |||||||||||    
T  11365207 ttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttataatcaaagttatttaaaaatatcttttcaattgaattaatcaa 11365108  T
Q  303 ag 304  Q
    ||    
T  11365107 ag 11365106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 365
Target Start/End: Complemental strand, 39838645 - 39838467
Alignment:
Q  183 gaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacata 282  Q
    |||| ||||||||||| || ||||||||| |||||| |  || ||  || || ||||||| ||||||||||||| ||||| |||| | |||| ||| |||    
T  39838645 gaattaataaagttgtgct-ttttaattagtcgaatatcattattattgtatcttttgttgcaaaagattcattcataatcaaaggt-tctttaaaaata 39838548  T
Q  283 ttttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||||||  | ||||||||| |  |||||||||| |||||||| |||  | ||||||||| ||| |||||  ||||||||||||    
T  39838547 ttttcaatataattaatcataatgagttaaaaagaaatatatttatacagtactaactagtaattaaaa--aataattttggt 39838467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 363
Target Start/End: Complemental strand, 17713431 - 17713276
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||| ||||| ||||||||| ||| || | ||||| || ||||| ||||||| ||||| ||| |||||| |||| || || |||  | ||||||||||    
T  17713431 ttttaactattccaatgttttt-ttcttgtactttttcttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaa 17713334  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||  | |||||||   |||| ||||| ||| ||||| ||||||||||||||||||||||||    
T  17713333 agcaatttaaaaa---atatttctatataaaactaattactaagtaaaaataataattttg 17713276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 363
Target Start/End: Complemental strand, 19014660 - 19014505
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||| ||||| ||||||||| ||| || | ||||| || ||||| ||||||| ||||| ||| |||||| |||| || || |||  | ||||||||||    
T  19014660 ttttaactattccaatgttttt-ttcttgtactttttcttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaa 19014563  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||  | |||||||   |||| ||||| ||| ||||| ||||||||||||||||||||||||    
T  19014562 agcaatttaaaaa---atatttctatataaaactaattactaagtaaaaataataattttg 19014505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 27541147 - 27541197
Alignment:
Q  313 aaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||||||||||||| || |||||| |||||| |||||||||||||||||    
T  27541147 aaataaatatatctatatattactaattactaaataaaaataataattttg 27541197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 7741792 - 7741724
Alignment:
Q  269 tctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatacta 337  Q
    ||||| ||||||||||||||  | |||||||||||  |||||||||| |||||||||| | ||||||||    
T  7741792 tctctaaaaacatattttcaacaaaattaatcaaaatgagttaaaaagaaatatatctctataatacta 7741724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 47000835 - 47000948
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||| |||  ||| ||||||||| |  |||||||||| ||||| ||||||| ||||| ||| || ||| |||| || ||||||  ||||||||||||    
T  47000835 ttttaatcatttaaatatttttcttcttatattttttgttgcaaaatattcatttataatcaaaattatctaaaaatat-ttttcaatagaattaatcaa 47000933  T
Q  303 agggagttaaaaata 317  Q
    || || |||||||||    
T  47000934 agcgaattaaaaata 47000948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 33290858 - 33290758
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||  ||| ||||||| | ||| ||||||||| || |||||||||| || || |||||||||| |||| ||| ||  |||| ||||||||||    
T  33290858 ttttaattatttcaatatttttctccttgcgttttttgttgcacaagattcatttatgatcaaagttctctaaaaatataattcaataa-aattaatcaa 33290760  T
Q  303 ag 304  Q
    ||    
T  33290759 ag 33290758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 18257971 - 18258015
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||||| ||| |||||||||||| |||||||||||||||| ||||    
T  18257971 atatatgtatataatactaactattaagtaaaaataataaatttg 18258015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42417977 - 42417929
Alignment:
Q  312 aaaataaatatatctatttaatactaactactaagtaaaaataataatt 360  Q
    |||| |||||||| ||| || || |||||||||||||||||||||||||    
T  42417977 aaaacaaatatatttatatagtattaactactaagtaaaaataataatt 42417929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 203 - 363
Target Start/End: Original strand, 26914312 - 26914472
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||  ||| ||||||||| ||||||||||||| ||||| ||||||| ||||| || ||| | | |||| |||||||||  | ||||||||||    
T  26914312 ttttaattattttaatatttttcttcttgcattttttgttgcaaaatattcatttataattaacgttatttaaaaatatattttcaatataattaatcaa 26914411  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |  || |||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  26914412 aacgaattaaaagtaaacatatgtatataatactaactactaagtaaaaataataattttg 26914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 363
Target Start/End: Complemental strand, 35812774 - 35812614
Alignment:
Q  204 tttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattt-tcataagaattaatcaa 302  Q
    ||||||||||| ||| || |||||| ||||||||||||| ||||| ||||||| ||||| |||||| ||| |||| |||||| |||  |||||| |||||    
T  35812774 tttaattattccaatattattcttcttgcattttttgttgcaaaatattcatttataatcaaagttatctaaaaatatatttatcaatagaattgatcaa 35812675  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    || || ||||||| |||||||||||| || |||||| || |||||||||||||||||||||    
T  35812674 agcgaattaaaaagaaatatatctatatagtactaattattaagtaaaaataataattttg 35812614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 361
Target Start/End: Original strand, 3940621 - 3940778
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||||  || |||||| ||| || |||||| ||| ||||| |||||||| | |||| ||||||| |  ||||||||||||    
T  3940621 ttttaattattctaatatttttctttttgtattttt-gttgcacaagatttatttataatcaaagttctttaaaaagatattttaaatagaattaatcaa 3940719  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattt 361  Q
    ||  | ||||||| |||||||||||| | ||||| ||||||||||||||||||||||||    
T  3940720 agtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 13431633 - 13431792
Alignment:
Q  202 attttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatca 301  Q
    |||||||||||||||| |||||| ||| || |||||||||| | ||||||||||| ||||| || ||||||   ||| |||||||||  ||||||| |||    
T  13431633 attttaattattcgaaagttttt-ttcttgtattttttgttgctaaagattcattcataatcaaggttctccacaaatatattttcaatagaattattca 13431731  T
Q  302 aagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    ||   | | |||||||||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  13431732 aaaaaaatcaaaaataaatatatctatataatactacctactaaataagaataataatttt 13431792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 362
Target Start/End: Complemental strand, 21828367 - 21828162
Alignment:
Q  156 ggtcttaaaatttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcat 255  Q
    |||| ||| |||||| ||| || |||||||  || ||| ||||||  |||||||||||| ||| |||||| || |  |||||||||| || |||||||||    
T  21828367 ggtcctaagatttttggtgcctgaggcgaaagaaaaaaattgtacccttttaattattctaatatttttcgtcttttattttttgttgcacaagattcat 21828268  T
Q  256 tgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataa 355  Q
    | ||||| ||||||||| |||||  ||||||||  || ||||||||||   ||||||||| ||||||||||||||  || | ||||  ||||||||||||    
T  21828267 ttataatcaaagttctc-taaaaagtattttcaatagcattaatcaaaacaagttaaaaagaaatatatctattttgtagtgactatgaagtaaaaataa 21828169  T
Q  356 taatttt 362  Q
    |||||||    
T  21828168 taatttt 21828162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 365
Target Start/End: Original strand, 40351700 - 40351899
Alignment:
Q  165 atttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataa 264  Q
    |||||| ||||||| | |||| ||||||| || | |  |||||||||||| ||| |||||  || |||||||||||||   ||||||| ||| ||||| |    
T  40351700 atttttggtgtcttggacgaaacaataaaattcttcccttttaattattctaattttttt--tcttgcattttttgttgataaagatttatttataatca 40351797  T
Q  265 aagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaa-taaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||||||| | |||| |||||||||  |||||||| ||| |  | ||||||| ||| ||||||||| |||||||||||||| |||||||||||||| ||||    
T  40351798 aagttctttaaaaatatattttcaatagaattaaacaaggataattaaaaaataattatatctatataatactaactactgagtaaaaataataactttg 40351897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 12177965 - 12177813
Alignment:
Q  205 ttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaag 304  Q
    |||||||||| |||  |||||||| | ||||||||||| ||||||||||||  |||||||| ||| ||| |||| |||||||||  | ||||||| |||     
T  12177965 ttaattattctaatagttttcttcttacattttttgttgcaaaagattcatctataataaa-gttttctaaaaatatattttcaataaaattaattaaac 12177867  T
Q  305 ggagttaaaaa--taaatatatctatttaatactaactactaagtaaaaataat 356  Q
     || |||||||  || |||||||||| || ||||||||||||||||||||||||    
T  12177866 cgaattaaaaagatatatatatctatatagtactaactactaagtaaaaataat 12177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 33480460 - 33480621
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||||||| |||||| ||||||| || ||||||| || || |||||| ||| |||||||  ||||| | |||||||||||| |  | ||||||||||    
T  33480460 ttttaattatttgaatgtctttcttcttgtattttttattgcagaagattaattcataataag-gttctttaaaaacatatttttaatataattaatcaa 33480558  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||  | ||| ||| |||||||||||| || ||||||||| ||  |||||||||||||||||||    
T  33480559 agcaatttagaaagaaatatatctatgtagtactaactattacataaaaataataattttggt 33480621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 3351240 - 3351119
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||  ||| ||||||||| |||||||||||||  |||| ||||||| ||||| |||||| ||| |||| ||| |||||  ||||||||||||    
T  3351240 ttttaattattaaaatatttttcttcttgcattttttgttgtaaaatattcatttataatcaaagttatctaaaaatataatttcaatagaattaatcaa 3351141  T
Q  303 agggagttaaaaataaatatat 324  Q
    || || ||||||| ||||||||    
T  3351140 agcgaattaaaaagaaatatat 3351119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 365
Target Start/End: Original strand, 9429304 - 9429467
Alignment:
Q  201 tattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatc 300  Q
    |||||||||||||  ||| |||| ||||  ||||||  |||| ||||| ||| ||| |||||  ||||||| |||||  |||||||||  ||||||||||    
T  9429304 tattttaattattttaatattttacttctagcatttgctgttgcaaaaaatttatttataatcgaagttct-ttaaataatattttcaatagaattaatc 9429402  T
Q  301 aaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||  ||| |||||| |||||||| ||| |||||||||||| ||| |||||||| ||||||||||    
T  9429403 aaaacgagataaaaagaaatatatttatataatactaactattaaataaaaatactaattttggt 9429467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 351
Target Start/End: Original strand, 42335943 - 42336062
Alignment:
Q  232 cattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctattta 331  Q
    ||||||||||| ||||||||||||| ||||| |||||| | | |||| |||||||||  | ||||||| |||  || ||||||| |||||||||||| ||    
T  42335943 cattttttgttgcaaaagattcatttataatcaaagttttttaaaaatatattttcactataattaattaaaccgaattaaaaagaaatatatctatata 42336042  T
Q  332 atactaactactaagtaaaa 351  Q
    |||||||||| ||| |||||    
T  42336043 atactaactattaactaaaa 42336062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 22318662 - 22318791
Alignment:
Q  232 cattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctattta 331  Q
    ||||||||||| ||||||||| ||| ||||| |||||| ||| |||| ||||| |||  | ||||||||||| ||| || |||| | | |||||||| ||    
T  22318662 cattttttgttgcaaaagatttatttataattaaagttttctaaaaatatattctcaatataattaatcaaacggaatt-aaaagatacatatctatata 22318760  T
Q  332 atactaactactaagtaaaaataataatttt 362  Q
    ||| |||||||||| ||||||||||||||||    
T  22318761 atattaactactaaataaaaataataatttt 22318791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 26448533 - 26448411
Alignment:
Q  203 ttttaattatt-cgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatca 301  Q
    ||||||||||| | ||| ||||| ||| ||||||||||||| ||||||||||||| || || |||||||||| |||| ||| ||| |  |||||||||||    
T  26448533 ttttaattatttcaaatattttttttcttgcattttttgttgcaaaagattcatttattatcaaagttctctaaaaatatacttttagtagaattaatca 26448434  T
Q  302 aagggagttaaaaataaatatat 324  Q
    ||| || ||||||| ||||||||    
T  26448433 aagtgaattaaaaagaaatatat 26448411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 26912486 - 26912345
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| || || ||| |||||||| ||| |||||  |||||||  |||| |||||| ||| |||| |||| || |  ||||||||||||    
T  26912486 ttttaattattctaatattatttttcttgcattttatgtgacaaat-attcatttgtaatcaaagttatctaaaaatatatcttgaatagaattaatcaa 26912388  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaa 345  Q
    || || ||||||| |||||||||||| || |||||||||||||    
T  26912387 agcgaattaaaaagaaatatatctatatagtactaactactaa 26912345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 21129326 - 21129451
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaa 332  Q
    ||||||| || ||||||||| ||| ||||| ||| |||||| |||| |||||||||  |||||||||||||   | ||||||| ||||||||||||||      
T  21129326 attttttattgcaaaagattaatttataatcaaaattctctaaaaaaatattttcaatagaattaatcaaaccaaattaaaaagaaatatatctattttg 21129425  T
Q  333 tactaactactaagtaaaaataataa 358  Q
    || | |||||||| ||| ||||||||    
T  21129426 tagtgactactaaataagaataataa 21129451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 21292802 - 21292861
Alignment:
Q  306 gagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||||||| |||||||| ||| | ||| ||||||||||||||||||||||||||||||    
T  21292802 gagttaaaaagaaatatatttatatgatattaactactaagtaaaaataataattttggt 21292861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 363
Target Start/End: Complemental strand, 36066271 - 36066113
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||| |||||| ||||| ||||||| || |||||| |||  |||||||| ||| ||||| ||| |||||| |||| |||||||||  | |||||||  |    
T  36066271 ttttagttattcaaatgtctttcttcttgtattttt-gttgtaaaagatttattcataatcaaaattctctaaaaatatattttcaatacaattaattta 36066173  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    || | ||||||| ||||| ||| |||   ||| ||| ||||||||||||||||||||||||    
T  36066172 agcgggttaaaattaaat-tatgtatgcgatattaattactaagtaaaaataataattttg 36066113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 15133276 - 15133397
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||| ||| | |||||||||||  |||| ||||||| ||||| |||||| ||| |||| || |||| |  ||||||||||||    
T  15133276 ttttaattattcaaatattttttttcttacattttttgttgtaaaatattcatttataatcaaagttatctaaaaatattttttaaatagaattaatcaa 15133375  T
Q  303 agggagttaaaaataaatatat 324  Q
    |  || ||| ||||| ||||||    
T  15133376 aacgaattagaaatatatatat 15133397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 31329665 - 31329716
Alignment:
Q  312 aaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||| |||||||| ||| ||||||||| ||| ||||||||||||||||||||    
T  31329665 aaaagaaatatatgtatataatactaattacgaagtaaaaataataattttg 31329716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 32982407 - 32982336
Alignment:
Q  291 agaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    |||||||||||||  |||||||||| |||||||| |||    | |||||||| |||||||||||||||||||    
T  32982407 agaattaatcaaaatgagttaaaaaaaaatatatgtatactctcctaactaccaagtaaaaataataatttt 32982336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 32982507 - 32982464
Alignment:
Q  184 aatcaataaagttgtactattttaattattcgaatgtttttctt 227  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||    
T  32982507 aatcaataaagttgtattattttaattattcgaatttttgtctt 32982464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 30095845 - 30095891
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||| ||| || || ||||||||||||||||||||||||||||||    
T  30095845 atatatatatatattaataactactaagtaaaaataataattttggt 30095891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 15134537 - 15134582
Alignment:
Q  320 tatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||||| ||| || ||||| |||||||||||||||||||||||||||    
T  15134537 tatatatatatagtactagctactaagtaaaaataataattttggt 15134582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 37996536 - 37996507
Alignment:
Q  336 taactactaagtaaaaataataattttggt 365  Q
    ||||||||||||||||||||||||||||||    
T  37996536 taactactaagtaaaaataataattttggt 37996507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 36572980 - 36572901
Alignment:
Q  241 ttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaata 321  Q
    |||||||||||||||| ||| | ||  || ||| |||||||||||  ||| |||||||| |||| ||||||||||||||||    
T  36572980 ttacaaaagattcattcatatttaagattatctaaaaacatatttcaata-gaattaatgaaagagagttaaaaataaata 36572901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 37996602 - 37996570
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataat 262  Q
    ||||||||||||||||||||||||||| |||||    
T  37996602 tgcattttttgttacaaaagattcatttataat 37996570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 365
Target Start/End: Complemental strand, 6005 - 5844
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||||||||| |||||| ||||||| || ||||||| || ||||| ||||||| ||||| ||| |||| | ||||||||||||||  | ||||||||||    
T  6005 ttttaattatttgaatgtctttcttcatgtattttttattgcaaaaaattcattcataatcaaaattctttaaaaacatattttcaatataattaatcaa 5906  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    ||  | ||| ||| |||||||||||| || ||||||||||| | |||||||||||||||||||    
T  5905 agcaatttagaaagaaatatatctatgtagtactaactactca-taaaaataataattttggt 5844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 363
Target Start/End: Complemental strand, 5163934 - 5163792
Alignment:
Q  221 ttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaat 320  Q
    |||||||| | ||||||||||||||||||||||||| ||||| |||||| ||| |||  ||||| |||  | |||||||||||  || ||||||| | ||    
T  5163934 ttttcttcttacattttttgttacaaaagattcatttataatcaaagttttctaaaataatattctcaatataattaatcaaaccgaattaaaaagatat 5163835  T
Q  321 atatctatttaatactaactactaagtaaaaataataattttg 363  Q
    |||| ||| || |||||||||||||||||||||||||||||||    
T  5163834 atatttatatagtactaactactaagtaaaaataataattttg 5163792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 36186579 - 36186700
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||||||||||||| | ||||||||||| ||||||||| ||| ||||| |||||||||| |||| |||||||||  | ||||||||||    
T  36186579 ttttaattattctaatgtttttcttcatacattttttgttgcaaaagatttatttataatcaaagttctctaaaaatatattttcaatataattaatcaa 36186678  T
Q  303 agggagttaaaaataaatatat 324  Q
    || || ||||||| ||||||||    
T  36186679 agagaattaaaaagaaatatat 36186700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 30257776 - 30257910
Alignment:
Q  230 tgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctat- 328  Q
    ||||||||||||| ||||||||| ||| ||||| |||||||||| |||| |||||||||  | |||||||||||  || || |||| ||||||||||||     
T  30257776 tgcattttttgtttcaaaagatttatttataatcaaagttctctaaaaatatattttcaatataattaatcaaaccgaattgaaaagaaatatatctata 30257875  T
Q  329 ttaatactaactactaagtaaaaataataattttg 363  Q
    ||| || |||||| |||||||||| ||||||||||    
T  30257876 ttagtattaactattaagtaaaaaaaataattttg 30257910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 365
Target Start/End: Original strand, 40876936 - 40877056
Alignment:
Q  245 aaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactacta 344  Q
    |||||||||| | ||||| || ||||| | |||| |||||||||  |||||||||| ||   ||||||||| |||||||| ||| ||||||||||||| |    
T  40876936 aaaagattcactcataatcaaggttctataaaaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactacca 40877035  T
Q  345 agtaaaaataataattttggt 365  Q
    |||||||||||||||||||||    
T  40877036 agtaaaaataataattttggt 40877056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 362
Target Start/End: Original strand, 36506809 - 36507000
Alignment:
Q  165 atttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataa 264  Q
    |||||| ||| | ||| ||||||||||||| |||||  ||||||| |||| ||||| ||| ||| ||||||||  |||  ||||||||| || |||        
T  36506809 atttttggtgccctagacgaatcaataaagatgtacgtttttaatcattcaaatgtcttttttcttgcattttc-gttggaaaagattcgttcatag--- 36506904  T
Q  265 aagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
      ||| ||| ||||| ||||||||  ||||| |||||||| |||||||||| |||||| ||||| |||||||||||||||| |||||||||| |||||    
T  36506905 --gttttctaaaaacgtattttcaatagaatcaatcaaagagagttaaaaacaaatatttctatataatactaactactaattaaaaataatgatttt 36507000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 16646928 - 16647055
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||  ||| ||||||||| |  |||||||||| || |||||||||| ||||| ||| |||||| |||| |||||||||  ||||||||||||    
T  16646928 ttttaattattttaatatttttcttcttttattttttgttgcacaagattcatttataattaaaattctctaaaaagatattttcaatagaattaatcaa 16647027  T
Q  303 agggagttaaaaataaatatatctattt 330  Q
    |   | ||||||| ||||||||||||||    
T  16647028 aacaaattaaaaagaaatatatctattt 16647055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 38562002 - 38561844
Alignment:
Q  202 attttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatca 301  Q
    ||||||| | ||| ||| ||||||||  || |||||||||| || || ||||||| ||||| |||||||||| |||| ||||||||| | ||||||||||    
T  38562002 attttaactgttctaatatttttctttttgtattttttgttgcacaatattcatttataatgaaagttctctaaaaaaatattttca-atgaattaatca 38561904  T
Q  302 aagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattt 361  Q
    ||   | ||||||| |||| ||||||| |  || |||||||||| |||||||||||||||    
T  38561903 aaacaaattaaaaagaaatgtatctatattgtaataactactaaataaaaataataattt 38561844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 363
Target Start/End: Complemental strand, 15925661 - 15925477
Alignment:
Q  182 cgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    ||||||||| ||||||| || ||||||||||| ||| || |||| |  || |||||||||||||||||||||||  || || |||||| |||  ||| ||    
T  15925661 cgaatcaatgaagttgtgct-ttttaattatttgaacgtctttccttttgtattttttgttacaaaagattcatc-attattaaagttttctagaaatat 15925564  T
Q  282 atttt---cataagaattaatcaaagggagttaaaaataaatatatctatttaatactaac--tactaagtaaaaataataattttg 363  Q
    |||||   ||  | ||||||| |||| |||||||||| ||||||||||||  |||||| ||  ||| ||||||||||||||||||||    
T  15925563 atttttttcaatataattaattaaagcgagttaaaaagaaatatatctatacaatacttacaatacaaagtaaaaataataattttg 15925477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 363
Target Start/End: Original strand, 28556603 - 28556734
Alignment:
Q  232 cattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctattta 331  Q
    |||||||| || | |||||||| || || || |||||||| | |||| ||||||| |  | |||||||||||  || || |||  |||| ||||||| ||    
T  28556603 cattttttatttccaaagattcgtttatcatcaaagttctttaaaaatatatttttaatataattaatcaaaccgaatttaaacgaaatgtatctatata 28556702  T
Q  332 atactaactactaagtaaaaataataattttg 363  Q
     |||||||||||||||||||||||||||||||    
T  28556703 gtactaactactaagtaaaaataataattttg 28556734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 352
Target Start/End: Complemental strand, 38134230 - 38134084
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    ||||| |||||| ||||| ||| ||| | ||||||||||| |||||||||||||  |||  || |||||| ||||| ||||||| |  | ||||||||||    
T  38134230 ttttagttattcaaatgtcttttttcttacattttttgttgcaaaagattcattcgtaaataaggttctc-taaaaaatatttttaatataattaatcaa 38134132  T
Q  303 agggagttaaaaataaatatatctatttaatactaactactaagtaaaaa 352  Q
    |  |||||||||| ||  |||| ||| || ||||||||||||||||||||    
T  38134131 atcgagttaaaaagaa--atatttatgtactactaactactaagtaaaaa 38134084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 320
Target Start/End: Original strand, 2886978 - 2887111
Alignment:
Q  187 caataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatatttt 286  Q
    ||||||| ||||||  |||||||||||| |||  |||||||| |||||||||||||  | | |||| ||| ||||| |||||||||| |||| || ||||    
T  2886978 caataaaattgtacctttttaattattctaatacttttcttcttgcattttttgttgtagatgatttatttataatcaaagttctctaaaaatatttttt 2887077  T
Q  287 cataagaattaatcaaagggagttaaaaataaat 320  Q
     |  |||||||||||||  || ||||||| ||||    
T  2887078 taatagaattaatcaaaacgaattaaaaaaaaat 2887111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 363
Target Start/End: Complemental strand, 18197520 - 18197338
Alignment:
Q  180 ggcgaatcaataaagttgt-actattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgata-ataaaagttctcttaaa 277  Q
    ||||||| ||||||||||| ||| |||||||| ||| ||||| ||||||| | ||||||| ||||||||| ||||||| ||| |||| | ||     |||    
T  18197520 ggcgaattaataaagttgtgact-ttttaatttttcaaatgtgtttcttcttacattttt-gttacaaaacattcattaatagataagattttgtgaaaa 18197423  T
Q  278 acatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    | |||||||||  ||| |||| ||||  |||||||||| |||||||| || | |||||||||||  ||||||||||||||||||||    
T  18197422 aaatattttcagtagacttaaccaaaacgagttaaaaagaaatatatgtaat-aatactaactatcaagtaaaaataataattttg 18197338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 366
Target Start/End: Original strand, 17271273 - 17271395
Alignment:
Q  247 aagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaa---taaatatatctatttaatactaactact 343  Q
    |||||||||| ||||| ||||||  || |||| |||||||||  | |||||||||||   | | |||||   || |||||||||| | ||||| ||||||    
T  17271273 aagattcatttataatcaaagtttgctaaaaatatattttcaatataattaatcaaaacaaatgaaaaaatatatatatatctatattatactgactact 17271372  T
Q  344 aagtaaaaataataattttggta 366  Q
    |||||||||||||||||||||||    
T  17271373 aagtaaaaataataattttggta 17271395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 360
Target Start/End: Original strand, 18829973 - 18830100
Alignment:
Q  234 ttttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaat-aaatatatctatttaa 332  Q
    |||||| || ||||| ||||||| ||||| |  ||||||| |||| |||||||||  | ||||||||| ||   ||||||||  |||||||||||| ||     
T  18829973 tttttttttgcaaaaaattcattcataatcattgttctctaaaaatatattttcaataaaattaatcatagcatgttaaaaaagaaatatatctatatag 18830072  T
Q  333 tactaactactaagtaaaaataataatt 360  Q
    ||||| | ||||||||||||||||||||    
T  18830073 tactacccactaagtaaaaataataatt 18830100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 288
Target Start/End: Original strand, 38608294 - 38608400
Alignment:
Q  183 gaatcaataaagttgta-ctattttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacat 281  Q
    ||||||||||| ||||| || |||||||||||| ||||| ||| ||| || |||||||||| |||| |||| ||| ||||| || ||||| | |||| ||    
T  38608294 gaatcaataaaattgtatctcttttaattattcaaatgtgtttattcctgtattttttgttgcaaatgattgattcataattaaggttctttaaaaatat 38608393  T
Q  282 attttca 288  Q
    |||||||    
T  38608394 attttca 38608400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 28226833 - 28226878
Alignment:
Q  321 atatctatttaatactaactactaagtaaaaataataattttggta 366  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||    
T  28226833 atatctatataatattaactactaaataaaaataataattttggta 28226878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 37912453 - 37912332
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaa 302  Q
    |||||||||||| ||| ||||||| | | |||| |||||| ||||| ||||||| ||||| ||||||  |  |||| |||||||||  ||||| ||||||    
T  37912453 ttttaattattcaaatatttttctccttacattgtttgttgcaaaatattcatttataatcaaagttacccaaaaatatattttcaagagaataaatcaa 37912354  T
Q  303 agggagttaaaaataaatatat 324  Q
    || || ||||||| | ||||||    
T  37912353 agcgaattaaaaagatatatat 37912332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 38035390 - 38035445
Alignment:
Q  307 agttaaaaataaatatatctatttaatactaactactaagtaaaaataataatttt 362  Q
    |||| |||| ||||||||  ||||||||||||||| | ||||||||||||||||||    
T  38035390 agtttaaaagaaatatattaatttaatactaactaatgagtaaaaataataatttt 38035445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 4206647 - 4206693
Alignment:
Q  319 atatatctatttaatactaactactaagtaaaaataataattttggt 365  Q
    |||||| ||| || |||||||||||||||||| ||||||||||||||    
T  4206647 atatatatatatattactaactactaagtaaatataataattttggt 4206693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 6621389 - 6621319
Alignment:
Q  293 aattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaaaataataattttg 363  Q
    ||||||||||||||||||||||| ||||||||  || |  || ||||||| || | |||||||||||||||    
T  6621389 aattaatcaaagggagttaaaaagaaatatatgcatatgctattaactaccaaatgaaaataataattttg 6621319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 356
Target Start/End: Original strand, 35280919 - 35281055
Alignment:
Q  222 tttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaata-aat 320  Q
    ||||||| |||||||||| | | |||||||||||| ||||| | | || | | |||| |||||||||  |||||||||||||   ||||||||| | |||    
T  35280919 tttcttcttgcattttttatga-aaaagattcattcataatgataattatttaaaaatatattttcaatagaattaatcaaatcaagttaaaaaaataat 35281017  T
Q  321 at--atctatttaatactaactactaagtaaaaataat 356  Q
    ||  ||||||  ||||||||||| ||||||||||||||    
T  35281018 atgtatctatacaatactaactattaagtaaaaataat 35281055  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 40705853 - 40705935
Alignment:
Q  166 tttttagtgtcttaggcgaatcaataaagttgtactattttaattattcgaatgtttttcttcgtgcattttttgttacaaaa 248  Q
    ||||| ||||| |||  |||||||||||| ||  |  ||||||||||| |||||| ||||||| |||||||||| ||||||||    
T  40705853 ttttttgtgtcctagatgaatcaataaagatgcgcccttttaattatttgaatgtctttcttcttgcattttttattacaaaa 40705935  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 26350440 - 26350528
Alignment:
Q  233 attttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatat 322  Q
    |||||||| | ||||| ||||||| ||||  |||||| | |||||| |||||||||  | |||||||||||| ||||| |||||||||||    
T  26350440 attttttgctgcaaaaaattcattcataaataaagtttt-ttaaaaaatattttcaataaaattaatcaaagcgagtttaaaataaatat 26350528  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 4206325 - 4206409
Alignment:
Q  220 tttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttcataagaattaatcaaag 304  Q
    ||||| ||| ||||||||||||| ||||| ||||||| ||||| |||||| ||| |||  || |||| |  ||||||||||||||    
T  4206325 ttttttttcttgcattttttgttgcaaaatattcatttataattaaagttatctaaaagtattttttaaatagaattaatcaaag 4206409  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 34345926 - 34345898
Alignment:
Q  335 ctaactactaagtaaaaataataattttg 363  Q
    |||||||||||||||||||||||||||||    
T  34345926 ctaactactaagtaaaaataataattttg 34345898  T

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Target: scaffold0531 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 9813 - 9698
Alignment:
Q  251 ttcattgataataaaagttctcttaaaacatattttcataagaattaatcaaagggagttaaaaataaatatatctatttaatactaactactaagtaaa 350  Q
    |||||| ||||| |||||| ||| |||| ||||| |||  | |||||||||||  || ||||||| | |||||||||| || ||||||||||||| ||||    
T  9813 ttcatttataatcaaagttttctaaaaatatattctcaatataattaatcaaaccgaattaaaaagatatatatctatatagtactaactactaaataaa 9714  T
Q  351 aataataattttggta 366  Q
    ||||||||||||||||    
T  9713 aataataattttggta 9698  T

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Target: scaffold0527 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 1805 - 1720
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttca 288  Q
    |||||||||||  ||| ||||||||| | |||||||| || ||||||||| ||| ||||| |||||||||| |||| |||||||||    
T  1805 ttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctctaaaaatatattttca 1720  T

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Target: scaffold0527; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 9868 - 9783
Alignment:
Q  203 ttttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttca 288  Q
    |||||||||||  ||| ||||||||| | |||||||| || ||||||||| ||| ||||| |||||||||| |||| |||||||||    
T  9868 ttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctctaaaaatatattttca 9783  T

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Target: scaffold1173 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 487 - 403
Alignment:
Q  204 tttaattattcgaatgtttttcttcgtgcattttttgttacaaaagattcattgataataaaagttctcttaaaacatattttca 288  Q
    ||||||||||| ||| ||||||||| |||||||||| ||  |||| ||| ||| ||||| |||||| ||| |||| || ||||||    
T  487 tttaattattcaaatatttttcttcttgcattttttattgtaaaatattaatttataatcaaagttatctaaaaatattttttca 403  T

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