View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_high_12 (Length: 370)
Name: NF7708_high_12
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 22227831 - 22227497
Alignment:
| Q |
19 |
aagacaggtaagtccaattatgcttaacctaacacataaataatttctaaaacagtacaaaacaagactaaaattaaatgacatagaacaaccaaaacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22227831 |
aagacaggtaagtccaattatgcttaacctaacacataaataatttctaaaacagtacaaaacaagactaaaattaaatgacatagaacaaccaaaacaa |
22227732 |
T |
|
| Q |
119 |
ctacaatttannnnnnnggctcaaaaatcaaaaactcatgaggatgatgatgatcagttggtgaagtttggtaaagaggcatgaggctcagtagccttag |
218 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22227731 |
ctacaatttatttttttg-ctcaaaaatcaaaaactcatgaggatgatgatgatcagttggtgaagtttggtaaagaggcatgaggctcagtagccttag |
22227633 |
T |
|
| Q |
219 |
cagcagtagatggttcaacatgtggtgaaggatcaacaggctttccaagtaaatcagctggcaaatcaggaacacccttcaagtaaaaagtgtagaacag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22227632 |
cagcagtagatggttcaacatgtggtgaaggatcaacaggctttccaagtaaatcagctggcaaatcagcaacacccttcaagtaaaaagtgtagaacag |
22227533 |
T |
|
| Q |
319 |
cttaaatgggaacacaagttgttgaagtttaacttg |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
22227532 |
cttaaatgggaacacaagttgttgaagtttaacttg |
22227497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University